About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13553MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE B
Clavulariidae_g13554CELL CYCLE PROTEIN
Clavulariidae_g13555PEPTIDOGLYCAN D,D-TRANSPEPTIDASE
Clavulariidae_g13556CELL SHAPE-DETERMINING PROTEIN MREC
Clavulariidae_g13557CELL SHAPE-DETERMINING PROTEIN MREB
Clavulariidae_g13558TRANSAMIDASE
Clavulariidae_g13559GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED
Clavulariidae_g1356RETROTRANSPOSON
Clavulariidae_g13560IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H
Clavulariidae_g135611-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE
Clavulariidae_g13562TPR REPEAT-CONTAINING PROTEIN PA4667
Clavulariidae_g13563METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB
Clavulariidae_g13564
Clavulariidae_g13565
Clavulariidae_g13566MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE
Clavulariidae_g13567
Clavulariidae_g13568ENDONUCLEASE-1
Clavulariidae_g13569METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB
Clavulariidae_g1357
Clavulariidae_g13570METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB
Clavulariidae_g13571PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13572SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13573
Clavulariidae_g13574
Clavulariidae_g13575MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE
Clavulariidae_g13576PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13577TRANSPOSON
Clavulariidae_g13578SERINE/THREONINE PROTEIN PHOSPHATASE
Clavulariidae_g13579COMPLEMENT COMPONENT 1
Clavulariidae_g1358
Clavulariidae_g135802-5A-DEPENDENT RIBONUCLEASE
Clavulariidae_g13581METHYLTRANSFERASE
Clavulariidae_g13582RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Clavulariidae_g13583RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Clavulariidae_g13584FACT COMPLEX SUBUNIT SSRP1
Clavulariidae_g13585INTEGRAL MEMBRANE PROTEIN DGCR2/IDD
Clavulariidae_g13586REVERSE TRANSCRIPTASE
Clavulariidae_g13587
Clavulariidae_g13588DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 1
Clavulariidae_g13589ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1359
Clavulariidae_g13590REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13591
Clavulariidae_g13592THAP DOMAIN PROTEIN
Clavulariidae_g13593UNCHARACTERIZED
Clavulariidae_g13594ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13595REVERSE TRANSCRIPTASES
Clavulariidae_g13596
Clavulariidae_g13597REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13598TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
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