Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g13238 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| Clavulariidae_g13239 | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
| Clavulariidae_g1324 | |
| Clavulariidae_g13240 | BLR3294 PROTEIN |
| Clavulariidae_g13241 | UNCHARACTERIZED |
| Clavulariidae_g13242 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| Clavulariidae_g13243 | TRANSCRIPTIONAL REGULATOR |
| Clavulariidae_g13244 | |
| Clavulariidae_g13245 | |
| Clavulariidae_g13246 | TRANSAMIDASE |
| Clavulariidae_g13247 | |
| Clavulariidae_g13248 | TRANSAMIDASE |
| Clavulariidae_g13249 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
| Clavulariidae_g1325 | |
| Clavulariidae_g13250 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| Clavulariidae_g13251 | |
| Clavulariidae_g13252 | |
| Clavulariidae_g13253 | |
| Clavulariidae_g13254 | AMINOMETHYLTRANSFERASE |
| Clavulariidae_g13255 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| Clavulariidae_g13256 | HTH-TYPE TRANSCRIPTIONAL REGULATOR |
| Clavulariidae_g13257 | DIGUANYLATE CYCLASE DGCP |
| Clavulariidae_g13258 | |
| Clavulariidae_g13259 | |
| Clavulariidae_g1326 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13260 | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
| Clavulariidae_g13261 | |
| Clavulariidae_g13262 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| Clavulariidae_g13263 | |
| Clavulariidae_g13264 | |
| Clavulariidae_g13265 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
| Clavulariidae_g13266 | SLR0254 PROTEIN |
| Clavulariidae_g13267 | |
| Clavulariidae_g13268 | MOXR FAMILY PROTEIN |
| Clavulariidae_g13269 | |
| Clavulariidae_g1327 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13270 | |
| Clavulariidae_g13271 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13272 | PROTEIN CBG26694 |
| Clavulariidae_g13273 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g13274 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| Clavulariidae_g13275 | PROTEIN CBG26694 |
| Clavulariidae_g13276 | PROTEIN ABHD14B-LIKE |
| Clavulariidae_g13277 | |
| Clavulariidae_g13278 | |
| Clavulariidae_g13279 | RETROTRANSPOSON |
| Clavulariidae_g1328 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g13280 | RETROTRANSPOSON |
| Clavulariidae_g13281 | TRANSCRIPTION INTERMEDIARY FACTOR |
| Clavulariidae_g13282 | PROTEIN CBG26694 |
