Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s007.g0188.t1 | SIMILAR TO HYPOTHETICAL PROTEIN MGC34837 |
| Lsat_s007.g0189.t1 | 40S RIBOSOMAL PROTEIN S28 |
| Lsat_s007.g0190.t1 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B |
| Lsat_s007.g0191.t1 | G-PROTEIN COUPLED RECEPTOR |
| Lsat_s007.g0192.t1 | SOLUTE CARRIER FAMILY 17 |
| Lsat_s007.g0193.t1 | BLADDER CANCER 10 KD PROTEIN HOMOLOG |
| Lsat_s007.g0194.t1 | HISTONE ACETYLTRANSFERASE-RELATED |
| Lsat_s007.g0195.t1 | |
| Lsat_s007.g0196.t1 | HISTONE ACETYLTRANSFERASE-RELATED |
| Lsat_s007.g0197.t1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| Lsat_s007.g0198.t1 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER |
| Lsat_s007.g0199.t1 | |
| Lsat_s007.g0200.t1 | |
| Lsat_s007.g0201.t1 | HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 2 |
| Lsat_s007.g0202.t1 | TUBULIN POLYGLUTAMYLASE |
| Lsat_s007.g0203.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| Lsat_s007.g0204.t1 | UNCHARACTERIZED |
| Lsat_s007.g0205.t1 | UNCHARACTERIZED |
| Lsat_s007.g0206.t1 | 60S RIBOSOMAL PROTEIN L4 |
| Lsat_s007.g0207.t1 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN |
| Lsat_s007.g0208.t1 | HMG DOMAIN-CONTAINING PROTEIN 4 |
| Lsat_s007.g0209.t1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| Lsat_s007.g0210.t1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
| Lsat_s007.g0211.t1 | VESICULAR MANNOSE-BINDING LECTIN |
| Lsat_s007.g0212.t1 | IFT140/172-RELATED |
| Lsat_s007.g0213.t1 | |
| Lsat_s007.g0214.t1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| Lsat_s007.g0215.t1 | |
| Lsat_s007.g0216.t1 | LD44762P |
| Lsat_s007.g0217.t1 | RIKEN CDNA D130052B06 GENE |
| Lsat_s007.g0218.t1 | GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-LIKE |
| Lsat_s007.g0219.t1 | - |
| Lsat_s007.g0220.t1 | - |
| Lsat_s007.g0221.t1 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Lsat_s007.g0222.t1 | AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN |
| Lsat_s007.g0223.t1 | PROTEIN CBG16200 |
| Lsat_s007.g0224.t1 | PROTEIN EVA-1 |
| Lsat_s007.g0225.t1 | HISTIDINE-RICH GLYCOPROTEIN |
| Lsat_s007.g0226.t1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Lsat_s007.g0227.t1 | SULFATASE MODIFYING FACTOR 1, 2 |
| Lsat_s007.g0228.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Lsat_s007.g0229.t1 | UNCHARACTERIZED |
| Lsat_s007.g0230.t1 | CALRETICULIN AND CALNEXIN |
| Lsat_s007.g0231.t1 | PID DOMAIN-CONTAINING PROTEIN |
| Lsat_s007.g0232.t1 | TRANSMEMBRANE PROTEIN 151 HOMOLOG |
| Lsat_s007.g0233.t1 | MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER |
| Lsat_s007.g0234.t1 | PROTEASOME SUBUNIT ALPHA/BETA |
| Lsat_s007.g0235.t1 | PROTEIN C9ORF135 |
| Lsat_s007.g0236.t1 | NETRIN/LAMININ-RELATED |
| Lsat_s007.g0237.t1 |
