Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s001.g0001.t1 | 6-PHOSPHOGLUCONOLACTONASE |
| Lsat_s001.g0002.t1 | ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 19 |
| Lsat_s001.g0003.t1 | CHROMOSOME 1 OPEN READING FRAME 112 |
| Lsat_s001.g0004.t1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Lsat_s001.g0005.t1 | |
| Lsat_s001.g0006.t1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Lsat_s001.g0007.t1 | |
| Lsat_s001.g0008.t1 | I-KAPPA-B-LIKE PROTEIN IKBL |
| Lsat_s001.g0009.t1 | MEMBRANE PROTEIN CH1 RELATED |
| Lsat_s001.g0010.t1 | |
| Lsat_s001.g0011.t1 | LEUCOKININ RECEPTOR-RELATED |
| Lsat_s001.g0012.t1 | UNCHARACTERIZED |
| Lsat_s001.g0013.t1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Lsat_s001.g0014.t1 | |
| Lsat_s001.g0015.t1 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 |
| Lsat_s001.g0016.t1 | SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT |
| Lsat_s001.g0017.t1 | G-PROTEIN COUPLED RECEPTOR 89-RELATED |
| Lsat_s001.g0018.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Lsat_s001.g0019.t1 | INTIMAL THICKNESS RECEPTOR-RELATED |
| Lsat_s001.g0020.t1 | |
| Lsat_s001.g0021.t1 | INTELECTIN |
| Lsat_s001.g0022.t1 | BETA-HEXOSAMINIDASE |
| Lsat_s001.g0023.t1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Lsat_s001.g0024.t1 | TRANSCRIPTION TERMINATION FACTOR 1 |
| Lsat_s001.g0025.t1 | NUCLEOTIDE KINASE |
| Lsat_s001.g0026.t1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 77 |
| Lsat_s001.g0027.t1 | |
| Lsat_s001.g0028.t1 | |
| Lsat_s001.g0029.t1 | |
| Lsat_s001.g0030.t1 | |
| Lsat_s001.g0031.t1 | |
| Lsat_s001.g0032.t1 | HOMEO BOX HB9 LIKE A-RELATED |
| Lsat_s001.g0033.t1 | |
| Lsat_s001.g0034.t1 | - |
| Lsat_s001.g0035.t1 | |
| Lsat_s001.g0036.t1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 |
| Lsat_s001.g0037.t1 | SELENOPROTEIN F |
| Lsat_s001.g0038.t1 | KELCH PROTEIN |
| Lsat_s001.g0039.t1 | |
| Lsat_s001.g0040.t1 | THYMOSIN BETA |
| Lsat_s001.g0041.t1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0042.t1 | DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN |
| Lsat_s001.g0043.t1 | KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG |
| Lsat_s001.g0044.t1 | LD33804P |
| Lsat_s001.g0045.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0046.t1 | TUBULIN POLYGLUTAMYLASE |
| Lsat_s001.g0047.t1 | MITOGUARDIN |
| Lsat_s001.g0048.t1 | TYROSINE-PROTEIN KINASE |
| Lsat_s001.g0049.t1 | INTEGRATOR COMPLEX SUBUNIT 5 |
| Lsat_s001.g0050.t1 | ARYLSULFATASE |
