Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s001.g0451.t1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22 |
| Lsat_s001.g0452.t1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| Lsat_s001.g0453.t1 | |
| Lsat_s001.g0454.t1 | PERSULFIDE DIOXYGENASE ETHE1 |
| Lsat_s001.g0455.t1 | ACROSIN-RELATED |
| Lsat_s001.g0456.t1 | PERSULFIDE DIOXYGENASE ETHE1 |
| Lsat_s001.g0457.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 15 |
| Lsat_s001.g0458.t1 | TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 |
| Lsat_s001.g0459.t1 | NFRKB-RELATED |
| Lsat_s001.g0460.t1 | HEPARAN SULFATE 2-O-SULFOTRANSFERASE |
| Lsat_s001.g0461.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0462.t1 | NUCLEOPORIN NUP188 HOMOLOG |
| Lsat_s001.g0463.t1 | N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE |
| Lsat_s001.g0464.t1 | |
| Lsat_s001.g0465.t1 | LUNG SEVEN TRANSMEMBRANE RECEPTOR |
| Lsat_s001.g0466.t1 | |
| Lsat_s001.g0467.t1 | PROTEIN DR1 |
| Lsat_s001.g0468.t1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| Lsat_s001.g0469.t1 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Lsat_s001.g0470.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Lsat_s001.g0471.t1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| Lsat_s001.g0472.t1 | UNCHARACTERIZED |
| Lsat_s001.g0473.t1 | ANKYRIN REPEAT AND SOCS BOX PROTEIN 17 |
| Lsat_s001.g0474.t1 | |
| Lsat_s001.g0475.t1 | |
| Lsat_s001.g0476.t1 | |
| Lsat_s001.g0477.t1 | |
| Lsat_s001.g0478.t1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Lsat_s001.g0479.t1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Lsat_s001.g0480.t1 | |
| Lsat_s001.g0481.t1 | RGPR-RELATED |
| Lsat_s001.g0482.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s001.g0483.t1 | |
| Lsat_s001.g0484.t1 | |
| Lsat_s001.g0485.t1 | UBIQUITIN-LIKE PROTEIN 5 |
| Lsat_s001.g0486.t1 | - |
| Lsat_s001.g0487.t1 | DNA POLYMERASE EPSILON SUBUNIT 3 |
| Lsat_s001.g0488.t1 | CASEIN KINASE II SUBUNIT BETA |
| Lsat_s001.g0489.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Lsat_s001.g0490.t1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| Lsat_s001.g0491.t1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| Lsat_s001.g0492.t1 | SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52 |
| Lsat_s001.g0493.t1 | DIMETHYLARGININE DIMETHYLAMINOHYDROLASE |
| Lsat_s001.g0494.t1 | BONUS, ISOFORM C-RELATED |
| Lsat_s001.g0495.t1 | NETRIN/LAMININ-RELATED |
| Lsat_s001.g0496.t1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0497.t1 | |
| Lsat_s001.g0498.t1 | |
| Lsat_s001.g0499.t1 | |
| Lsat_s001.g0500.t1 |
