Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s001.g0501.t1 | |
| Lsat_s001.g0502.t1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
| Lsat_s001.g0503.t1 | |
| Lsat_s001.g0504.t1 | |
| Lsat_s001.g0505.t1 | |
| Lsat_s001.g0506.t1 | |
| Lsat_s001.g0507.t1 | |
| Lsat_s001.g0508.t1 | AT29763P-RELATED |
| Lsat_s001.g0509.t1 | GLYCOSYLTRANSFERASE |
| Lsat_s001.g0510.t1 | EXPERIMENTAL AUTOIMMUNE PROSTATITIS ANTIGEN 2-RELATED |
| Lsat_s001.g0511.t1 | NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A |
| Lsat_s001.g0512.t1 | GLUTAMINE SYNTHETASE |
| Lsat_s001.g0513.t1 | PROTEIN SCAI |
| Lsat_s001.g0514.t1 | ADP-RIBOSYLGLYCOHYDROLASE |
| Lsat_s001.g0515.t1 | DEOXYHYPUSINE SYNTHASE |
| Lsat_s001.g0516.t1 | DIMETHYLANILINE MONOOXYGENASE |
| Lsat_s001.g0517.t1 | DUAL SPECIFICITY PROTEIN KINASE |
| Lsat_s001.g0518.t1 | TRANSMEMBRANE PROTEIN 192 |
| Lsat_s001.g0519.t1 | |
| Lsat_s001.g0520.t1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0521.t1 | |
| Lsat_s001.g0522.t1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
| Lsat_s001.g0523.t1 | |
| Lsat_s001.g0524.t1 | ANKYRIN REPEAT-CONTAINING |
| Lsat_s001.g0525.t1 | UNCHARACTERIZED |
| Lsat_s001.g0526.t1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| Lsat_s001.g0527.t1 | PEPTIDYL-TRNA HYDROLASE |
| Lsat_s001.g0528.t1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157 |
| Lsat_s001.g0529.t1 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS C |
| Lsat_s001.g0530.t1 | NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER |
| Lsat_s001.g0531.t1 | AMMONIUM TRANSPORTER |
| Lsat_s001.g0532.t1 | AMMONIUM TRANSPORTER |
| Lsat_s001.g0533.t1 | |
| Lsat_s001.g0534.t1 | |
| Lsat_s001.g0535.t1 | |
| Lsat_s001.g0536.t1 | AMMONIUM TRANSPORTER |
| Lsat_s001.g0537.t1 | WSCD FAMILY MEMBER CG9164 |
| Lsat_s001.g0538.t1 | |
| Lsat_s001.g0539.t1 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 |
| Lsat_s001.g0540.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN 19 |
| Lsat_s001.g0541.t1 | |
| Lsat_s001.g0542.t1 | HMG-BOX TRANSCRIPTION FACTOR BBX |
| Lsat_s001.g0543.t1 | |
| Lsat_s001.g0544.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Lsat_s001.g0545.t1 | NEPHRIN |
| Lsat_s001.g0546.t1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
| Lsat_s001.g0547.t1 | |
| Lsat_s001.g0548.t1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s001.g0549.t1 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0550.t1 | SYNTAXIN |
