About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s001.g0651.t1TRNA-DIHYDROURIDINE SYNTHASE
Lsat_s001.g0652.t1
Lsat_s001.g0653.t1COLLAGEN ALPHA
Lsat_s001.g0654.t1
Lsat_s001.g0655.t1
Lsat_s001.g0656.t1TYROSINE-PROTEIN KINASE RECEPTOR
Lsat_s001.g0657.t1
Lsat_s001.g0658.t1
Lsat_s001.g0659.t1MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
Lsat_s001.g0660.t1ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Lsat_s001.g0661.t1
Lsat_s001.g0662.t1
Lsat_s001.g0663.t1-
Lsat_s001.g0664.t1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Lsat_s001.g0665.t1
Lsat_s001.g0666.t1LIM DOMAIN-BINDING PROTEIN
Lsat_s001.g0667.t1LIM/HOMEOBOX PROTEIN LHX
Lsat_s001.g0668.t1
Lsat_s001.g0669.t1
Lsat_s001.g0670.t1
Lsat_s001.g0671.t1BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN
Lsat_s001.g0672.t1
Lsat_s001.g0673.t1
Lsat_s001.g0674.t1
Lsat_s001.g0675.t1
Lsat_s001.g0676.t1
Lsat_s001.g0677.t1
Lsat_s001.g0678.t1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Lsat_s001.g0679.t1UNCHARACTERIZED
Lsat_s001.g0680.t1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Lsat_s001.g0681.t1PSEUDOURIDINE SYNTHASE-RELATED
Lsat_s001.g0682.t1USP DOMAIN-CONTAINING PROTEIN
Lsat_s001.g0683.t1MULTIVESICULAR BODY SUBUNIT 12B
Lsat_s001.g0684.t1USP DOMAIN-CONTAINING PROTEIN
Lsat_s001.g0685.t1
Lsat_s001.g0686.t1MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Lsat_s001.g0687.t1MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Lsat_s001.g0688.t1PROTEIN FAM47B
Lsat_s001.g0689.t1
Lsat_s001.g0690.t1MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Lsat_s001.g0691.t1
Lsat_s001.g0692.t1
Lsat_s001.g0693.t1
Lsat_s001.g0694.t1
Lsat_s001.g0695.t1
Lsat_s001.g0696.t1
Lsat_s001.g0697.t1FAMILY WITH SEQUENCE SIMILARITY 102
Lsat_s001.g0698.t1SOLUTE CARRIER FAMILY 25
Lsat_s001.g0699.t1FCH AND DOUBLE SH3 DOMAINS PROTEIN
Lsat_s001.g0700.t1
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