About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s001.g0401.t1TRANSCRIPTION FACTOR SPT20 HOMOLOG
Lsat_s001.g0402.t1
Lsat_s001.g0403.t1RETINOBLASTOMA-BINDING PROTEIN 5
Lsat_s001.g0404.t1EGF-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s001.g0405.t1
Lsat_s001.g0406.t1
Lsat_s001.g0407.t1
Lsat_s001.g0408.t1
Lsat_s001.g0409.t1
Lsat_s001.g0410.t1UNCHARACTERIZED
Lsat_s001.g0411.t1UNCHARACTERIZED
Lsat_s001.g0412.t1ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED
Lsat_s001.g0413.t1IG-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s001.g0414.t1IG-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s001.g0415.t1UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1
Lsat_s001.g0416.t1ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Lsat_s001.g0417.t1AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
Lsat_s001.g0418.t1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
Lsat_s001.g0419.t1TUBULIN
Lsat_s001.g0420.t1TUBULIN
Lsat_s001.g0421.t18-OXOGUANINE DNA GLYCOSYLASE
Lsat_s001.g0422.t1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 3
Lsat_s001.g0423.t1
Lsat_s001.g0424.t1
Lsat_s001.g0425.t1
Lsat_s001.g0426.t1
Lsat_s001.g0427.t1
Lsat_s001.g0428.t130S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR
Lsat_s001.g0429.t1GEM-ASSOCIATED PROTEIN 4
Lsat_s001.g0430.t1OPSIN
Lsat_s001.g0431.t1
Lsat_s001.g0432.t1GAMMA-SECRETASE SUBUNIT PEN-2
Lsat_s001.g0433.t1U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
Lsat_s001.g0434.t1U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
Lsat_s001.g0435.t1A1 CISTRON SPLICING FACTOR AAR2-RELATED
Lsat_s001.g0436.t1P53 INDUCED PROTEIN
Lsat_s001.g0437.t140S RIBOSOMAL PROTEIN S25
Lsat_s001.g0438.t1MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM70
Lsat_s001.g0439.t1MOLTING PROTEIN MLT-4
Lsat_s001.g0440.t1
Lsat_s001.g0441.t1MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Lsat_s001.g0442.t1XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED
Lsat_s001.g0443.t1ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6
Lsat_s001.g0444.t1NUCLEAR HORMONE RECEPTOR
Lsat_s001.g0445.t1
Lsat_s001.g0446.t1
Lsat_s001.g0447.t1
Lsat_s001.g0448.t1
Lsat_s001.g0449.t1TYROSINE-PROTEIN KINASE RECEPTOR
Lsat_s001.g0450.t1RAW, ISOFORM A
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