Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s001.g0351.t1 | WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED |
| Lsat_s001.g0352.t1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Lsat_s001.g0353.t1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Lsat_s001.g0354.t1 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Lsat_s001.g0355.t1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| Lsat_s001.g0356.t1 | ALKALINE CERAMIDASE 3 |
| Lsat_s001.g0357.t1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
| Lsat_s001.g0358.t1 | UNCHARACTERIZED |
| Lsat_s001.g0359.t1 | |
| Lsat_s001.g0360.t1 | |
| Lsat_s001.g0361.t1 | |
| Lsat_s001.g0362.t1 | DC12-RELATED |
| Lsat_s001.g0363.t1 | SURFEIT LOCUS PROTEIN 6 |
| Lsat_s001.g0364.t1 | SURFEIT LOCUS PROTEIN 6 |
| Lsat_s001.g0365.t1 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
| Lsat_s001.g0366.t1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN |
| Lsat_s001.g0367.t1 | |
| Lsat_s001.g0368.t1 | |
| Lsat_s001.g0369.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Lsat_s001.g0370.t1 | |
| Lsat_s001.g0371.t1 | |
| Lsat_s001.g0372.t1 | |
| Lsat_s001.g0373.t1 | |
| Lsat_s001.g0374.t1 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Lsat_s001.g0375.t1 | ARGININOSUCCINATE SYNTHASE |
| Lsat_s001.g0376.t1 | IRON-SULFUR PROTEIN NUBPL |
| Lsat_s001.g0377.t1 | NICASTRIN |
| Lsat_s001.g0378.t1 | NICASTRIN |
| Lsat_s001.g0379.t1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| Lsat_s001.g0380.t1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Lsat_s001.g0381.t1 | |
| Lsat_s001.g0382.t1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Lsat_s001.g0383.t1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Lsat_s001.g0384.t1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Lsat_s001.g0385.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Lsat_s001.g0386.t1 | |
| Lsat_s001.g0387.t1 | |
| Lsat_s001.g0388.t1 | - |
| Lsat_s001.g0389.t1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Lsat_s001.g0390.t1 | |
| Lsat_s001.g0391.t1 | |
| Lsat_s001.g0392.t1 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Lsat_s001.g0393.t1 | ENOLASE (DUF1399) |
| Lsat_s001.g0394.t1 | |
| Lsat_s001.g0395.t1 | G-PROTEIN COUPLED RECEPTOR |
| Lsat_s001.g0396.t1 | PLECKSTRIN HOMOLOGY-LIKE DOMAIN, FAMILY B, MEMBER 3 |
| Lsat_s001.g0397.t1 | RIBOSOMAL PROTEIN L17 |
| Lsat_s001.g0398.t1 | PROTEIN MAELSTROM HOMOLOG |
| Lsat_s001.g0399.t1 | SERINE/THREONINE-PROTEIN KINASE KIST |
| Lsat_s001.g0400.t1 |
