About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s007.g0038.t1THIOREDOXIN-LIKE PROTEIN 1
Lsat_s007.g0039.t1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Lsat_s007.g0040.t1TUDOR DOMAIN CONTAINING PROTEIN
Lsat_s007.g0041.t1ORNITHINE DECARBOXYLASE ANTIZYME
Lsat_s007.g0042.t1
Lsat_s007.g0043.t1
Lsat_s007.g0044.t1-
Lsat_s007.g0045.t1-
Lsat_s007.g0046.t1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B
Lsat_s007.g0047.t1TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT
Lsat_s007.g0048.t1UBIQUINONE BIOSYNTHESIS PROTEIN
Lsat_s007.g0049.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Lsat_s007.g0050.t1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
Lsat_s007.g0051.t1UNCHARACTERIZED
Lsat_s007.g0052.t1
Lsat_s007.g0053.t1CADHERIN DOMAIN-CONTAINING PROTEIN
Lsat_s007.g0054.t1CYSTEINE PROTEASE FAMILY C1-RELATED
Lsat_s007.g0055.t1
Lsat_s007.g0056.t1PROTEIN CBG03580
Lsat_s007.g0057.t1
Lsat_s007.g0058.t1
Lsat_s007.g0059.t1
Lsat_s007.g0060.t1DNA PRIMASE LARGE SUBUNIT
Lsat_s007.g0061.t1GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1
Lsat_s007.g0062.t1MYOTONIC DYSTROPHY S/T KINASE-RELATED
Lsat_s007.g0063.t1
Lsat_s007.g0064.t1XK-RELATED PROTEIN
Lsat_s007.g0065.t1
Lsat_s007.g0066.t1
Lsat_s007.g0067.t1STEROL DESATURASE
Lsat_s007.g0068.t1COLLAGEN ALPHA
Lsat_s007.g0069.t1
Lsat_s007.g0070.t1
Lsat_s007.g0071.t1
Lsat_s007.g0072.t1NETRIN/LAMININ-RELATED
Lsat_s007.g0073.t1
Lsat_s007.g0074.t1RNA 2',3'-CYCLIC PHOSPHODIESTERASE
Lsat_s007.g0075.t14.1 G PROTEIN
Lsat_s007.g0076.t1PROTEIN CBG16200
Lsat_s007.g0077.t1PROTEIN CBG16200
Lsat_s007.g0078.t1NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNIT
Lsat_s007.g0079.t1FATTY ACID ACYL TRANSFERASE-RELATED
Lsat_s007.g0080.t1
Lsat_s007.g0081.t1
Lsat_s007.g0082.t1
Lsat_s007.g0083.t1
Lsat_s007.g0084.t1BA1-643
Lsat_s007.g0085.t1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
Lsat_s007.g0086.t1
Lsat_s007.g0087.t1BA1-643
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