About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s007.g0088.t1
Lsat_s007.g0089.t1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
Lsat_s007.g0090.t1
Lsat_s007.g0091.t1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
Lsat_s007.g0092.t1
Lsat_s007.g0093.t1
Lsat_s007.g0094.t1CXC DOMAIN-CONTAINING PROTEIN-RELATED
Lsat_s007.g0095.t1
Lsat_s007.g0096.t1
Lsat_s007.g0097.t1
Lsat_s007.g0098.t1UNCHARACTERIZED
Lsat_s007.g0099.t1NUCLEOTIDE KINASE
Lsat_s007.g0100.t1CYSTEINE PROTEASE ATG4
Lsat_s007.g0101.t1CELL CYCLE CHECKPOINT PROTEIN RAD17
Lsat_s007.g0102.t1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Lsat_s007.g0103.t1CELL CYCLE CHECKPOINT PROTEIN RAD17
Lsat_s007.g0104.t1UBIQUITIN-CONJUGATING ENZYME E2
Lsat_s007.g0105.t1-
Lsat_s007.g0106.t1FERREDOXIN/ADRENODOXIN
Lsat_s007.g0107.t1GOLGIN- RELATED
Lsat_s007.g0108.t1SERINE/THREONINE PROTEIN KINASE
Lsat_s007.g0109.t1EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1
Lsat_s007.g0110.t1NUCLEAR RECEPTOR COACTIVATOR 6
Lsat_s007.g0111.t1PEROXISOMAL MEMBRANE PROTEIN PEX13
Lsat_s007.g0112.t140S RIBOSOMAL PROTEIN S7
Lsat_s007.g0113.t1RIBONUCLEASE H1
Lsat_s007.g0114.t1
Lsat_s007.g0115.t1NEURENSIN 1-RELATED
Lsat_s007.g0116.t1PROTEIN STPG4
Lsat_s007.g0117.t1RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Lsat_s007.g0118.t1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Lsat_s007.g0119.t1DEK PROTEIN
Lsat_s007.g0120.t1HISTONE DEACETYLASE HDAC1-RELATED
Lsat_s007.g0121.t1KPL2-RELATED
Lsat_s007.g0122.t1EUKARYOTIC TRANSLATION INITIATION FACTOR 2D
Lsat_s007.g0123.t1HOOK PROTEINS
Lsat_s007.g0124.t1MICOS COMPLEX SUBUNIT MIC13
Lsat_s007.g0125.t1
Lsat_s007.g0126.t1GH01354P
Lsat_s007.g0127.t1ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER
Lsat_s007.g0128.t1SOLUTE CARRIER FAMILY 25 MEMBER 44
Lsat_s007.g0129.t1TRANSLATIONAL ACTIVATOR GCN1-RELATED
Lsat_s007.g0130.t1MUCOLIPIN
Lsat_s007.g0131.t1
Lsat_s007.g0132.t1
Lsat_s007.g0133.t1
Lsat_s007.g0134.t1
Lsat_s007.g0135.t1
Lsat_s007.g0136.t1
Lsat_s007.g0137.t1
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