Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s007.g0088.t1 | |
Lsat_s007.g0089.t1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Lsat_s007.g0090.t1 | |
Lsat_s007.g0091.t1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Lsat_s007.g0092.t1 | |
Lsat_s007.g0093.t1 | |
Lsat_s007.g0094.t1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Lsat_s007.g0095.t1 | |
Lsat_s007.g0096.t1 | |
Lsat_s007.g0097.t1 | |
Lsat_s007.g0098.t1 | UNCHARACTERIZED |
Lsat_s007.g0099.t1 | NUCLEOTIDE KINASE |
Lsat_s007.g0100.t1 | CYSTEINE PROTEASE ATG4 |
Lsat_s007.g0101.t1 | CELL CYCLE CHECKPOINT PROTEIN RAD17 |
Lsat_s007.g0102.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
Lsat_s007.g0103.t1 | CELL CYCLE CHECKPOINT PROTEIN RAD17 |
Lsat_s007.g0104.t1 | UBIQUITIN-CONJUGATING ENZYME E2 |
Lsat_s007.g0105.t1 | - |
Lsat_s007.g0106.t1 | FERREDOXIN/ADRENODOXIN |
Lsat_s007.g0107.t1 | GOLGIN- RELATED |
Lsat_s007.g0108.t1 | SERINE/THREONINE PROTEIN KINASE |
Lsat_s007.g0109.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 |
Lsat_s007.g0110.t1 | NUCLEAR RECEPTOR COACTIVATOR 6 |
Lsat_s007.g0111.t1 | PEROXISOMAL MEMBRANE PROTEIN PEX13 |
Lsat_s007.g0112.t1 | 40S RIBOSOMAL PROTEIN S7 |
Lsat_s007.g0113.t1 | RIBONUCLEASE H1 |
Lsat_s007.g0114.t1 | |
Lsat_s007.g0115.t1 | NEURENSIN 1-RELATED |
Lsat_s007.g0116.t1 | PROTEIN STPG4 |
Lsat_s007.g0117.t1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
Lsat_s007.g0118.t1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
Lsat_s007.g0119.t1 | DEK PROTEIN |
Lsat_s007.g0120.t1 | HISTONE DEACETYLASE HDAC1-RELATED |
Lsat_s007.g0121.t1 | KPL2-RELATED |
Lsat_s007.g0122.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2D |
Lsat_s007.g0123.t1 | HOOK PROTEINS |
Lsat_s007.g0124.t1 | MICOS COMPLEX SUBUNIT MIC13 |
Lsat_s007.g0125.t1 | |
Lsat_s007.g0126.t1 | GH01354P |
Lsat_s007.g0127.t1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
Lsat_s007.g0128.t1 | SOLUTE CARRIER FAMILY 25 MEMBER 44 |
Lsat_s007.g0129.t1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
Lsat_s007.g0130.t1 | MUCOLIPIN |
Lsat_s007.g0131.t1 | |
Lsat_s007.g0132.t1 | |
Lsat_s007.g0133.t1 | |
Lsat_s007.g0134.t1 | |
Lsat_s007.g0135.t1 | |
Lsat_s007.g0136.t1 | |
Lsat_s007.g0137.t1 |