The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides49088 | RETROTRANSPOSON |
| Paelopatides49089 | RETROTRANSPOSON |
| Paelopatides49090 | |
| Paelopatides49091 | |
| Paelopatides49092 | CALCIUM-BINDING PROTEIN 8-RELATED |
| Paelopatides49093 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides49094 | |
| Paelopatides49095 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Paelopatides49096 | SERINE/THREONINE PROTEIN KINASE |
| Paelopatides49097 | |
| Paelopatides49098 | POL PROTEIN |
| Paelopatides49099 | ENDONUCLEASE-RELATED |
| Paelopatides49100 | |
| Paelopatides49101 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides49102 | |
| Paelopatides49103 | ENDONUCLEASE |
| Paelopatides49104 | |
| Paelopatides49105 | ZGC:195170 |
| Paelopatides49106 | PROTEIN CBG26694 |
| Paelopatides49107 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides49108 | PROTEIN CBG26694 |
| Paelopatides49109 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides49110 | |
| Paelopatides49111 | SENSOR KINASE-RELATED |
| Paelopatides49112 | SENSOR KINASE-RELATED |
| Paelopatides49113 | OLIGOSACCHARYLTRANSFERASE COMPLEX SUBUNIT OSTC |
| Paelopatides49114 | BLEOMYCIN HYDROLASE |
| Paelopatides49115 | BLEOMYCIN HYDROLASE |
| Paelopatides49116 | VESICLE PROTEIN SORTING-ASSOCIATED |
| Paelopatides49117 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides49118 | HUNTINGTIN INTERACTING PROTEIN 1 |
| Paelopatides49119 | |
| Paelopatides49120 | HUNTINGTIN INTERACTING PROTEIN 1 |
| Paelopatides49121 | |
| Paelopatides49122 | |
| Paelopatides49123 | E3 UBIQUITIN-PROTEIN LIGASE TRIM37 |
| Paelopatides49124 | E3 UBIQUITIN-PROTEIN LIGASE TRIM37 |
| Paelopatides49125 | |
| Paelopatides49126 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Paelopatides49127 | CYCLIN |
| Paelopatides49128 | ISLET CELL AUTOANTIGEN 1 |
| Paelopatides49129 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| Paelopatides49130 | |
| Paelopatides49131 | |
| Paelopatides49132 | |
| Paelopatides49133 | |
| Paelopatides49134 | POLY A POLYMERASE CID PAP -RELATED |
| Paelopatides49135 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides49136 | POLY A POLYMERASE CID PAP -RELATED |
| Paelopatides49137 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
