About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00001SPHINGOMYELIN SYNTHETASE
Paelopatides00002-
Paelopatides00003TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Paelopatides00004-
Paelopatides00005HISTONE ACETYLTRANSFERASE
Paelopatides00006CADHERIN DOMAIN-CONTAINING PROTEIN
Paelopatides00007WD40 REPEAT PROTEIN
Paelopatides00008PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides00009-
Paelopatides00010CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides00011SOLUTE CARRIER FAMILY 25
Paelopatides00012DPY30-RELATED
Paelopatides0001354S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL
Paelopatides00014DNAJ HOMOLOG SUBFAMILY C MEMBER 12
Paelopatides00015NUCLEAR FACTOR NF-KAPPA-B PROTEIN
Paelopatides00016NUCLEAR FACTOR NF-KAPPA-B PROTEIN
Paelopatides00017LONG-CHAIN-FATTY-ACID--COA LIGASE
Paelopatides00018REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00020-
Paelopatides00021-
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