About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00043CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides00044ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides00045CRUMBS FAMILY MEMBER
Paelopatides00046GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 2
Paelopatides00047CRUMBS FAMILY MEMBER
Paelopatides00048-
Paelopatides00049POL PROTEIN
Paelopatides00050BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides00051TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides00052PROTEIN CBG26694
Paelopatides00053-
Paelopatides00054PROTEIN CBG26694
Paelopatides00055PROTEIN CBG26694
Paelopatides00056PROTEIN CBG26694
Paelopatides00057ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides00058FI04643P-RELATED
Paelopatides00059-
Paelopatides00060LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73
Paelopatides00061-
Paelopatides00062REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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