About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00083PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides00084-
Paelopatides00085CELL DIVISION PROTEIN KINASE
Paelopatides00086SNARE-ASSOCIATED PROTEIN SNAPIN
Paelopatides00087TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides00088-
Paelopatides00089-
Paelopatides00090-
Paelopatides00091UNCHARACTERIZED
Paelopatides00092REVERSE TRANSCRIPTASES
Paelopatides00093-
Paelopatides00094TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides00095PROTEIN CBG26694
Paelopatides00096REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00097ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides000985-OXOPROLINASE RELATED
Paelopatides000995-OXOPROLINASE RELATED
Paelopatides00100-
Paelopatides00101TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides00102COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
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