About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00022TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
Paelopatides00023-
Paelopatides00024DUF614 FAMILY PROTEIN-RELATED
Paelopatides00025ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides00026PROTEIN CBG26694
Paelopatides00027-
Paelopatides00028RIBOSOMAL PROTEIN S6 KINASE
Paelopatides00029PROTEIN CBG26694
Paelopatides00030-
Paelopatides00031L-ASPARAGINASE
Paelopatides00032WSCD FAMILY MEMBER CG9164
Paelopatides00033-
Paelopatides00034ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides00035-
Paelopatides00037-
Paelopatides00038ENZYMATIC POLYPROTEIN-RELATED
Paelopatides00039ENDONUCLEASE-RELATED
Paelopatides00040-
Paelopatides00041DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides00042TETRASPANIN
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