The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides48887 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48888 | |
| Paelopatides48889 | |
| Paelopatides48890 | SODIUM/HYDROGEN EXCHANGER |
| Paelopatides48891 | REGULATOR OF CHROMOSOME CONDENSATION |
| Paelopatides48892 | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED |
| Paelopatides48893 | LEUCOKININ RECEPTOR-RELATED |
| Paelopatides48894 | |
| Paelopatides48895 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Paelopatides48896 | SULFOTRANSFERASE SULT |
| Paelopatides48897 | INACTIVE TYROSINE-PROTEIN KINASE 7 |
| Paelopatides48898 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48899 | RETROTRANSPOSON |
| Paelopatides48900 | GAG-RELATED PROTEIN |
| Paelopatides48901 | |
| Paelopatides48902 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides48903 | ANION EXCHANGE PROTEIN |
| Paelopatides48904 | ANION EXCHANGE PROTEIN |
| Paelopatides48905 | CELL CYCLE CONTROL PROTEIN CWF25 |
| Paelopatides48906 | |
| Paelopatides48907 | |
| Paelopatides48908 | |
| Paelopatides48909 | TENSIN |
| Paelopatides48910 | TENSIN |
| Paelopatides48911 | KREV INTERACTION TRAPPED 1-RELATED |
| Paelopatides48912 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1 |
| Paelopatides48913 | BECLIN 1 |
| Paelopatides48914 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Paelopatides48915 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Paelopatides48916 | RETROTRANSPOSON |
| Paelopatides48917 | RETROTRANSPOSON |
| Paelopatides48918 | RETROTRANSPOSON |
| Paelopatides48919 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Paelopatides48920 | DNA2/NAM7 HELICASE FAMILY |
| Paelopatides48921 | CRISPR-ASSOCIATED EXONUCLEASE CAS4 |
| Paelopatides48922 | PROTEIN CASC3 |
| Paelopatides48923 | PROTEIN CASC3 |
| Paelopatides48924 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Paelopatides48925 | |
| Paelopatides48926 | CELL DIVISION PROTEIN KINASE |
| Paelopatides48927 | S-ADENOSYLMETHIONINE DECARBOXYLASE |
| Paelopatides48928 | |
| Paelopatides48929 | S-ADENOSYLMETHIONINE DECARBOXYLASE |
| Paelopatides48930 | |
| Paelopatides48931 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48932 | ADHESION G PROTEIN-COUPLED RECEPTOR G7 |
| Paelopatides48933 | MEIOTIC RECOMBINATION PROTEIN REC114 |
| Paelopatides48934 | RNA BINDING PROTEIN |
| Paelopatides48935 | RNA BINDING PROTEIN |
| Paelopatides48936 |
