About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_004439-T1-
LLU|FUN_004440-T1
LLU|FUN_004441-T1
LLU|FUN_004444-T1TYROSINE-PROTEIN KINASE RECEPTOR
LLU|FUN_004445-T1
LLU|FUN_004446-T1WSCD FAMILY MEMBER CG9164
LLU|FUN_004447-T1WSCD FAMILY MEMBER CG9164
LLU|FUN_004448-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
LLU|FUN_004449-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
LLU|FUN_004450-T1
LLU|FUN_004451-T1
LLU|FUN_004452-T1
LLU|FUN_004453-T1
LLU|FUN_004454-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 65
LLU|FUN_004455-T1COMM DOMAIN-CONTAINING PROTEIN 9
LLU|FUN_004456-T1
LLU|FUN_004457-T1NUCLEOBINDIN
LLU|FUN_004458-T1
LLU|FUN_004461-T1TENASCIN
LLU|FUN_004462-T1
LLU|FUN_004464-T1
LLU|FUN_004465-T1CYTOKINE RECEPTOR
LLU|FUN_004466-T1RAN GTPASE-ACTIVATING PROTEIN 1
LLU|FUN_004467-T1SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54
LLU|FUN_004468-T1FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED
LLU|FUN_004469-T1
LLU|FUN_004470-T1
LLU|FUN_004471-T1
LLU|FUN_004472-T1
LLU|FUN_004473-T1LEUCINE RICH REPEAT FAMILY PROTEIN
LLU|FUN_004474-T1
LLU|FUN_004475-T1
LLU|FUN_004476-T1
LLU|FUN_004477-T1
LLU|FUN_004478-T1POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP
LLU|FUN_004479-T1
LLU|FUN_004480-T1NUCLEAR PORE COMPLEX PROTEIN NUP133
LLU|FUN_004481-T1NUCLEAR PORE COMPLEX PROTEIN NUP160
LLU|FUN_004482-T1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C
LLU|FUN_004483-T1
LLU|FUN_004484-T1
LLU|FUN_004485-T1
LLU|FUN_004486-T1
LLU|FUN_004487-T1
LLU|FUN_004488-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
LLU|FUN_004489-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
LLU|FUN_004490-T1
LLU|FUN_004491-T1
LLU|FUN_004492-T1
LLU|FUN_004493-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
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