Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_004139-T1 | PARTITIONING DEFECTIVE 3 RELATED |
LLU|FUN_004140-T1 | |
LLU|FUN_004141-T1 | TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE |
LLU|FUN_004142-T1 | |
LLU|FUN_004143-T1 | |
LLU|FUN_004144-T1 | |
LLU|FUN_004145-T1 | |
LLU|FUN_004146-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_004147-T1 | |
LLU|FUN_004148-T1 | PELOTA |
LLU|FUN_004149-T1 | PROTEIN KINASE RELATED |
LLU|FUN_004150-T1 | |
LLU|FUN_004151-T1 | |
LLU|FUN_004152-T1 | |
LLU|FUN_004153-T1 | PROTEIN KINASE RELATED |
LLU|FUN_004154-T1 | XPA-BINDING PROTEIN 1-RELATED |
LLU|FUN_004155-T1 | |
LLU|FUN_004156-T1 | CARBONIC ANHYDRASE |
LLU|FUN_004157-T1 | RP42 RELATED |
LLU|FUN_004158-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
LLU|FUN_004159-T1 | 20 KD NUCLEAR CAP BINDING PROTEIN |
LLU|FUN_004160-T1 | MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT |
LLU|FUN_004161-T1 | MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT |
LLU|FUN_004162-T1 | INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG |
LLU|FUN_004163-T1 | INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG |
LLU|FUN_004164-T1 | PROTEIN IWS1 HOMOLOG |
LLU|FUN_004165-T1 | |
LLU|FUN_004166-T1 | NHL REPEAT-CONTAINING PROTEIN-RELATED |
LLU|FUN_004167-T1 | |
LLU|FUN_004168-T1 | |
LLU|FUN_004169-T1 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
LLU|FUN_004170-T1 | |
LLU|FUN_004171-T1 | NEUROPEPTIDES RECEPTOR |
LLU|FUN_004172-T1 | CARBONYL REDUCTASE 1-RELATED |
LLU|FUN_004173-T1 | ACTIVATOR OF S-PHASE KINASE-RELATED |
LLU|FUN_004174-T1 | ARYLSULFATASE FAMILY MEMBER |
LLU|FUN_004175-T1 | UNCHARACTERIZED |
LLU|FUN_004176-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
LLU|FUN_004177-T1 | OS11G0677101 PROTEIN |
LLU|FUN_004178-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
LLU|FUN_004179-T1 | |
LLU|FUN_004180-T1 | RGD1565685 PROTEIN |
LLU|FUN_004181-T1 | |
LLU|FUN_004182-T1 | |
LLU|FUN_004183-T1 | |
LLU|FUN_004184-T1 | ATP-DEPENDENT RNA HELICASE |
LLU|FUN_004185-T1 | |
LLU|FUN_004186-T1 | UNCHARACTERIZED |
LLU|FUN_004187-T1 | |
LLU|FUN_004188-T1 |