Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_004189-T1 | STEROL ISOMERASE |
LLU|FUN_004190-T1 | IMPORTIN ALPHA |
LLU|FUN_004191-T1 | |
LLU|FUN_004192-T1 | |
LLU|FUN_004193-T1 | |
LLU|FUN_004194-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
LLU|FUN_004195-T1 | |
LLU|FUN_004196-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
LLU|FUN_004197-T1 | |
LLU|FUN_004198-T1 | |
LLU|FUN_004199-T1 | |
LLU|FUN_004200-T1 | |
LLU|FUN_004201-T1 | GLUTAREDOXIN FAMILY MEMBER |
LLU|FUN_004202-T1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_004203-T1 | HEDGEHOG-INTERACTING PROTEIN |
LLU|FUN_004204-T1 | |
LLU|FUN_004205-T1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
LLU|FUN_004206-T1 | ENOYL-COA HYDRATASE |
LLU|FUN_004207-T1 | |
LLU|FUN_004208-T1 | DYNEIN REGULATORY COMPLEX PROTEIN 8 |
LLU|FUN_004209-T1 | |
LLU|FUN_004210-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER |
LLU|FUN_004211-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
LLU|FUN_004212-T1 | COILED-COIL DOMAIN-CONTAINING 166 |
LLU|FUN_004213-T1 | GLYCOSYLTRANSFERASE-RELATED |
LLU|FUN_004214-T1 | |
LLU|FUN_004215-T1 | |
LLU|FUN_004216-T1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
LLU|FUN_004217-T1 | BRISC AND BRCA1-A COMPLEX MEMBER 2 |
LLU|FUN_004218-T1 | GDP-D-GLUCOSE PHOSPHORYLASE 1 |
LLU|FUN_004219-T1 | |
LLU|FUN_004220-T1 | AP COMPLEX SUBUNIT MU |
LLU|FUN_004221-T1 | |
LLU|FUN_004222-T1 | |
LLU|FUN_004223-T1 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
LLU|FUN_004224-T1 | AUTOPHAGY-RELATED 2, ISOFORM A |
LLU|FUN_004225-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_004226-T1 | AUTOPHAGY-RELATED 2, ISOFORM A |
LLU|FUN_004227-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_004228-T1 | |
LLU|FUN_004229-T1 | |
LLU|FUN_004230-T1 | |
LLU|FUN_004231-T1 | |
LLU|FUN_004232-T1 | |
LLU|FUN_004233-T1 | |
LLU|FUN_004234-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
LLU|FUN_004235-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
LLU|FUN_004236-T1 | |
LLU|FUN_004237-T1 | |
LLU|FUN_004238-T1 | CLE |