About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_004339-T1PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
LLU|FUN_004340-T1
LLU|FUN_004341-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
LLU|FUN_004342-T1
LLU|FUN_004343-T1SPHINGOMYELIN PHOSPHODIESTERASE
LLU|FUN_004344-T1AUTOSOMAL HIGHLY CONSERVED PROTEIN
LLU|FUN_004345-T1
LLU|FUN_004346-T1ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_004347-T1
LLU|FUN_004348-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
LLU|FUN_004349-T1INNER KINETOCHORE SUBUNIT MAL2
LLU|FUN_004350-T1IMMUNOGLOBULIN
LLU|FUN_004351-T1
LLU|FUN_004352-T1
LLU|FUN_004353-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_004354-T1
LLU|FUN_004355-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_004356-T1
LLU|FUN_004357-T1
LLU|FUN_004358-T1
LLU|FUN_004359-T1
LLU|FUN_004360-T1-
LLU|FUN_004361-T1PROGRAMMED CELL DEATH PROTEIN 2-LIKE
LLU|FUN_004362-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
LLU|FUN_004363-T1CHROMOSOME TRANSMISSION FIDELITY FACTOR 18
LLU|FUN_004364-T1
LLU|FUN_004365-T1CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS
LLU|FUN_004366-T1
LLU|FUN_004367-T1
LLU|FUN_004368-T1
LLU|FUN_004369-T1
LLU|FUN_004370-T1
LLU|FUN_004371-T1
LLU|FUN_004372-T1
LLU|FUN_004373-T1
LLU|FUN_004374-T1
LLU|FUN_004375-T1
LLU|FUN_004376-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
LLU|FUN_004377-T1
LLU|FUN_004378-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_004379-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_004380-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_004381-T1
LLU|FUN_004382-T1
LLU|FUN_004383-T1ACYL-COA-BINDING PROTEIN, ACBP
LLU|FUN_004384-T1CAMK FAMILY PROTEIN KINASE
LLU|FUN_004385-T1PHOSPHOLIPID ACYLTRANSFERASE
LLU|FUN_004386-T1
LLU|FUN_004387-T1
LLU|FUN_004388-T1WD40 PROTEIN CIAO1
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