About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_004038-T1CYSTEINE-RICH, ACIDIC INTEGRAL MEMBRANE PROTEIN-RELATED
LLU|FUN_004039-T1
LLU|FUN_004040-T1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
LLU|FUN_004041-T1PRENYLATED RAB ACCEPTOR 1-RELATED
LLU|FUN_004042-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
LLU|FUN_004043-T1NKAP DOMAIN-CONTAINING 1
LLU|FUN_004044-T1UNCHARACTERIZED
LLU|FUN_004045-T1BCDNA.GH03377
LLU|FUN_004046-T1CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10
LLU|FUN_004047-T1BONUS, ISOFORM C-RELATED
LLU|FUN_004048-T1
LLU|FUN_004049-T1HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
LLU|FUN_004050-T1HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
LLU|FUN_004051-T1
LLU|FUN_004052-T1
LLU|FUN_004053-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_004054-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_004055-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_004056-T1PHENYLALANYL-TRNA SYNTHETASE
LLU|FUN_004057-T1
LLU|FUN_004059-T1NHL REPEAT-CONTAINING PROTEIN-RELATED
LLU|FUN_004060-T1UNCHARACTERIZED
LLU|FUN_004061-T1UNCHARACTERIZED
LLU|FUN_004062-T1
LLU|FUN_004063-T1PROPERDIN
LLU|FUN_004064-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_004065-T1
LLU|FUN_004066-T1ANNEXIN
LLU|FUN_004067-T1
LLU|FUN_004068-T1
LLU|FUN_004069-T1
LLU|FUN_004070-T1LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN
LLU|FUN_004071-T1
LLU|FUN_004072-T1SPARC OSTEONECTIN
LLU|FUN_004073-T1MIP08469P
LLU|FUN_004074-T1MIP08469P
LLU|FUN_004075-T1
LLU|FUN_004076-T1FRINGE-RELATED
LLU|FUN_004077-T1
LLU|FUN_004078-T1SYNTAXIN
LLU|FUN_004079-T1
LLU|FUN_004080-T1NETRIN/LAMININ-RELATED
LLU|FUN_004081-T1
LLU|FUN_004082-T1
LLU|FUN_004083-T1NETRIN/LAMININ-RELATED
LLU|FUN_004084-T1RIBONUCLEIC ACID BINDING PROTEIN S1
LLU|FUN_004085-T1
LLU|FUN_004086-T1EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
LLU|FUN_004087-T1
LLU|FUN_004088-T1DNA LIGASE 1/3 FAMILY MEMBER
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