Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_004038-T1 | CYSTEINE-RICH, ACIDIC INTEGRAL MEMBRANE PROTEIN-RELATED |
LLU|FUN_004039-T1 | |
LLU|FUN_004040-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
LLU|FUN_004041-T1 | PRENYLATED RAB ACCEPTOR 1-RELATED |
LLU|FUN_004042-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 |
LLU|FUN_004043-T1 | NKAP DOMAIN-CONTAINING 1 |
LLU|FUN_004044-T1 | UNCHARACTERIZED |
LLU|FUN_004045-T1 | BCDNA.GH03377 |
LLU|FUN_004046-T1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
LLU|FUN_004047-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_004048-T1 | |
LLU|FUN_004049-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_004050-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_004051-T1 | |
LLU|FUN_004052-T1 | |
LLU|FUN_004053-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_004054-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_004055-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_004056-T1 | PHENYLALANYL-TRNA SYNTHETASE |
LLU|FUN_004057-T1 | |
LLU|FUN_004059-T1 | NHL REPEAT-CONTAINING PROTEIN-RELATED |
LLU|FUN_004060-T1 | UNCHARACTERIZED |
LLU|FUN_004061-T1 | UNCHARACTERIZED |
LLU|FUN_004062-T1 | |
LLU|FUN_004063-T1 | PROPERDIN |
LLU|FUN_004064-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_004065-T1 | |
LLU|FUN_004066-T1 | ANNEXIN |
LLU|FUN_004067-T1 | |
LLU|FUN_004068-T1 | |
LLU|FUN_004069-T1 | |
LLU|FUN_004070-T1 | LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN |
LLU|FUN_004071-T1 | |
LLU|FUN_004072-T1 | SPARC OSTEONECTIN |
LLU|FUN_004073-T1 | MIP08469P |
LLU|FUN_004074-T1 | MIP08469P |
LLU|FUN_004075-T1 | |
LLU|FUN_004076-T1 | FRINGE-RELATED |
LLU|FUN_004077-T1 | |
LLU|FUN_004078-T1 | SYNTAXIN |
LLU|FUN_004079-T1 | |
LLU|FUN_004080-T1 | NETRIN/LAMININ-RELATED |
LLU|FUN_004081-T1 | |
LLU|FUN_004082-T1 | |
LLU|FUN_004083-T1 | NETRIN/LAMININ-RELATED |
LLU|FUN_004084-T1 | RIBONUCLEIC ACID BINDING PROTEIN S1 |
LLU|FUN_004085-T1 | |
LLU|FUN_004086-T1 | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
LLU|FUN_004087-T1 | |
LLU|FUN_004088-T1 | DNA LIGASE 1/3 FAMILY MEMBER |