About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_003938-T1CASEIN KINASE-RELATED
LLU|FUN_003939-T1CASEIN KINASE-RELATED
LLU|FUN_003940-T1VERY KIND PROTEIN
LLU|FUN_003941-T1
LLU|FUN_003942-T1VERY KIND PROTEIN
LLU|FUN_003943-T1
LLU|FUN_003944-T1HERMANSKY-PUDLAK SYNDROME PROTEIN 1
LLU|FUN_003945-T1CORTACTIN AND DREBRIN
LLU|FUN_003946-T140S RIBOSOMAL PROTEIN S3A
LLU|FUN_003947-T1LIPASE MATURATION FACTOR
LLU|FUN_003948-T1RHO FAMILY GTPASE
LLU|FUN_003949-T1
LLU|FUN_003950-T1
LLU|FUN_003951-T1
LLU|FUN_003952-T1
LLU|FUN_003953-T1
LLU|FUN_003954-T1
LLU|FUN_003955-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4
LLU|FUN_003956-T1
LLU|FUN_003957-T1GLYCOSYLTRANSFERASE-RELATED
LLU|FUN_003958-T1GLYCOSYLTRANSFERASE-RELATED
LLU|FUN_003959-T1
LLU|FUN_003960-T1GLYCOSYLTRANSFERASE-RELATED
LLU|FUN_003961-T1GLYCOSYLTRANSFERASE-RELATED
LLU|FUN_003962-T1
LLU|FUN_003963-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
LLU|FUN_003964-T1SERINE/THREONINE-PROTEIN KINASE NEK
LLU|FUN_003965-T1OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
LLU|FUN_003966-T1-
LLU|FUN_003967-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
LLU|FUN_003968-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
LLU|FUN_003969-T1OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
LLU|FUN_003970-T1WD REPEAT CONTAINING PROTEIN 3 WDR3
LLU|FUN_003971-T1
LLU|FUN_003972-T1
LLU|FUN_003973-T1
LLU|FUN_003974-T15'-NUCLEOTIDASE-RELATED
LLU|FUN_003975-T1WD REPEAT CONTAINING PROTEIN 3 WDR3
LLU|FUN_003976-T1
LLU|FUN_003977-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
LLU|FUN_003978-T1SH3 DOMAIN-CONTAINING
LLU|FUN_003979-T1SH3 DOMAIN-CONTAINING
LLU|FUN_003980-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
LLU|FUN_003981-T1INOSITOL POLYPHOSPHATE KINASE
LLU|FUN_003982-T1EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1
LLU|FUN_003983-T1HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
LLU|FUN_003984-T1
LLU|FUN_003985-T1TUMOR NECROSIS FACTOR RECEPTOR
LLU|FUN_003986-T1
LLU|FUN_003987-T1
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