Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_003938-T1 | CASEIN KINASE-RELATED |
LLU|FUN_003939-T1 | CASEIN KINASE-RELATED |
LLU|FUN_003940-T1 | VERY KIND PROTEIN |
LLU|FUN_003941-T1 | |
LLU|FUN_003942-T1 | VERY KIND PROTEIN |
LLU|FUN_003943-T1 | |
LLU|FUN_003944-T1 | HERMANSKY-PUDLAK SYNDROME PROTEIN 1 |
LLU|FUN_003945-T1 | CORTACTIN AND DREBRIN |
LLU|FUN_003946-T1 | 40S RIBOSOMAL PROTEIN S3A |
LLU|FUN_003947-T1 | LIPASE MATURATION FACTOR |
LLU|FUN_003948-T1 | RHO FAMILY GTPASE |
LLU|FUN_003949-T1 | |
LLU|FUN_003950-T1 | |
LLU|FUN_003951-T1 | |
LLU|FUN_003952-T1 | |
LLU|FUN_003953-T1 | |
LLU|FUN_003954-T1 | |
LLU|FUN_003955-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 |
LLU|FUN_003956-T1 | |
LLU|FUN_003957-T1 | GLYCOSYLTRANSFERASE-RELATED |
LLU|FUN_003958-T1 | GLYCOSYLTRANSFERASE-RELATED |
LLU|FUN_003959-T1 | |
LLU|FUN_003960-T1 | GLYCOSYLTRANSFERASE-RELATED |
LLU|FUN_003961-T1 | GLYCOSYLTRANSFERASE-RELATED |
LLU|FUN_003962-T1 | |
LLU|FUN_003963-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
LLU|FUN_003964-T1 | SERINE/THREONINE-PROTEIN KINASE NEK |
LLU|FUN_003965-T1 | OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED |
LLU|FUN_003966-T1 | - |
LLU|FUN_003967-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
LLU|FUN_003968-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
LLU|FUN_003969-T1 | OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED |
LLU|FUN_003970-T1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
LLU|FUN_003971-T1 | |
LLU|FUN_003972-T1 | |
LLU|FUN_003973-T1 | |
LLU|FUN_003974-T1 | 5'-NUCLEOTIDASE-RELATED |
LLU|FUN_003975-T1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
LLU|FUN_003976-T1 | |
LLU|FUN_003977-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_003978-T1 | SH3 DOMAIN-CONTAINING |
LLU|FUN_003979-T1 | SH3 DOMAIN-CONTAINING |
LLU|FUN_003980-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_003981-T1 | INOSITOL POLYPHOSPHATE KINASE |
LLU|FUN_003982-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 |
LLU|FUN_003983-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE SETD2 |
LLU|FUN_003984-T1 | |
LLU|FUN_003985-T1 | TUMOR NECROSIS FACTOR RECEPTOR |
LLU|FUN_003986-T1 | |
LLU|FUN_003987-T1 |