About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_004594-T1PROTEIN CBG15099
LLU|FUN_004595-T1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
LLU|FUN_004596-T1ZINC FINGER PROTEIN
LLU|FUN_004597-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
LLU|FUN_004598-T1PROTEIN CBG20215-RELATED
LLU|FUN_004599-T1DYNEIN ASSEMBLY FACTOR 5, AXONEMAL
LLU|FUN_004600-T1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A
LLU|FUN_004601-T1CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1
LLU|FUN_004602-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_004603-T1FOLLISTATIN-RELATED
LLU|FUN_004604-T1
LLU|FUN_004605-T1BAND 7 PROTEIN-RELATED
LLU|FUN_004606-T1UNCHARACTERIZED
LLU|FUN_004607-T1SI:DKEY-97L20.6
LLU|FUN_004608-T1AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED
LLU|FUN_004609-T1
LLU|FUN_004610-T1PHOSPHATASE WITH HOMOLOGY TO TENSIN
LLU|FUN_004611-T1
LLU|FUN_004612-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
LLU|FUN_004613-T1-
LLU|FUN_004614-T1UNCHARACTERIZED
LLU|FUN_004615-T1
LLU|FUN_004616-T1SOLUTE CARRIER FAMILY 13 MEMBER
LLU|FUN_004617-T1
LLU|FUN_004618-T1
LLU|FUN_004619-T1
LLU|FUN_004620-T1
LLU|FUN_004621-T1
LLU|FUN_004622-T1SRR1-LIKE PROTEIN
LLU|FUN_004623-T1SERINE/THREONINE-PROTEIN KINASE
LLU|FUN_004624-T1LD33804P
LLU|FUN_004625-T1
LLU|FUN_004626-T1
LLU|FUN_004627-T1
LLU|FUN_004628-T1
LLU|FUN_004629-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14
LLU|FUN_004630-T1GLYCOLIPID TRANSFER PROTEIN-RELATED
LLU|FUN_004631-T1ARMADILLO SEGMENT POLARITY PROTEIN
LLU|FUN_004632-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 10
LLU|FUN_004633-T1MOLTING PROTEIN MLT-4
LLU|FUN_004634-T1BLR2807 PROTEIN
LLU|FUN_004635-T1
LLU|FUN_004636-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_004637-T1PHOSPHORYLASE B KINASE REGULATORY SUBUNIT
LLU|FUN_004638-T1LEUCINE AMINOPEPTIDASE-RELATED
LLU|FUN_004639-T1CORTACTIN AND DREBRIN
LLU|FUN_004640-T1
LLU|FUN_004641-T1
LLU|FUN_004642-T1SOLUBLE NSF ATTACHMENT PROTEIN SNAP
LLU|FUN_004643-T1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
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