Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_004594-T1 | PROTEIN CBG15099 |
LLU|FUN_004595-T1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
LLU|FUN_004596-T1 | ZINC FINGER PROTEIN |
LLU|FUN_004597-T1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
LLU|FUN_004598-T1 | PROTEIN CBG20215-RELATED |
LLU|FUN_004599-T1 | DYNEIN ASSEMBLY FACTOR 5, AXONEMAL |
LLU|FUN_004600-T1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
LLU|FUN_004601-T1 | CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_004602-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
LLU|FUN_004603-T1 | FOLLISTATIN-RELATED |
LLU|FUN_004604-T1 | |
LLU|FUN_004605-T1 | BAND 7 PROTEIN-RELATED |
LLU|FUN_004606-T1 | UNCHARACTERIZED |
LLU|FUN_004607-T1 | SI:DKEY-97L20.6 |
LLU|FUN_004608-T1 | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED |
LLU|FUN_004609-T1 | |
LLU|FUN_004610-T1 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
LLU|FUN_004611-T1 | |
LLU|FUN_004612-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
LLU|FUN_004613-T1 | - |
LLU|FUN_004614-T1 | UNCHARACTERIZED |
LLU|FUN_004615-T1 | |
LLU|FUN_004616-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_004617-T1 | |
LLU|FUN_004618-T1 | |
LLU|FUN_004619-T1 | |
LLU|FUN_004620-T1 | |
LLU|FUN_004621-T1 | |
LLU|FUN_004622-T1 | SRR1-LIKE PROTEIN |
LLU|FUN_004623-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_004624-T1 | LD33804P |
LLU|FUN_004625-T1 | |
LLU|FUN_004626-T1 | |
LLU|FUN_004627-T1 | |
LLU|FUN_004628-T1 | |
LLU|FUN_004629-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14 |
LLU|FUN_004630-T1 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
LLU|FUN_004631-T1 | ARMADILLO SEGMENT POLARITY PROTEIN |
LLU|FUN_004632-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 10 |
LLU|FUN_004633-T1 | MOLTING PROTEIN MLT-4 |
LLU|FUN_004634-T1 | BLR2807 PROTEIN |
LLU|FUN_004635-T1 | |
LLU|FUN_004636-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_004637-T1 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
LLU|FUN_004638-T1 | LEUCINE AMINOPEPTIDASE-RELATED |
LLU|FUN_004639-T1 | CORTACTIN AND DREBRIN |
LLU|FUN_004640-T1 | |
LLU|FUN_004641-T1 | |
LLU|FUN_004642-T1 | SOLUBLE NSF ATTACHMENT PROTEIN SNAP |
LLU|FUN_004643-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |