About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_004644-T1
LLU|FUN_004645-T1
LLU|FUN_004646-T1
LLU|FUN_004647-T1KINESIN-LIKE PROTEIN KLP-3
LLU|FUN_004648-T1GPI TRANSAMIDASE COMPONENT PIG-U
LLU|FUN_004649-T1PALMITOYLTRANSFERASE ZDHHC16
LLU|FUN_004650-T1
LLU|FUN_004651-T1OPSIN
LLU|FUN_004652-T1
LLU|FUN_004653-T1
LLU|FUN_004654-T1
LLU|FUN_004655-T1
LLU|FUN_004656-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_004657-T1
LLU|FUN_004658-T1
LLU|FUN_004659-T1
LLU|FUN_004660-T1
LLU|FUN_004661-T1
LLU|FUN_004662-T1YIPPEE DOMAIN-CONTAINING PROTEIN
LLU|FUN_004663-T1
LLU|FUN_004664-T1
LLU|FUN_004665-T1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
LLU|FUN_004666-T1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
LLU|FUN_004667-T1
LLU|FUN_004668-T1
LLU|FUN_004669-T1
LLU|FUN_004670-T1
LLU|FUN_004671-T1PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN
LLU|FUN_004672-T1
LLU|FUN_004673-T1
LLU|FUN_004674-T1
LLU|FUN_004675-T1MISEXPRESSION SUPPRESSOR OF RAS 6
LLU|FUN_004676-T1PROTEIN ARGININE N-METHYLTRANSFERASE 5
LLU|FUN_004677-T1MRNA GUANINE-7- METHYLTRANSFERASE
LLU|FUN_004678-T1
LLU|FUN_004679-T1UNCHARACTERIZED
LLU|FUN_004680-T1
LLU|FUN_004681-T1
LLU|FUN_004682-T1
LLU|FUN_004683-T1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
LLU|FUN_004684-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
LLU|FUN_004685-T1DRAB11-RELATED
LLU|FUN_004686-T1ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
LLU|FUN_004687-T1JITTERBUG, ISOFORM N
LLU|FUN_004688-T1
LLU|FUN_004689-T1PROLYL-TRNA SYNTHETASE
LLU|FUN_004690-T1BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN
LLU|FUN_004691-T1
LLU|FUN_004692-T1
LLU|FUN_004693-T1TRANS-SULFURATION ENZYME FAMILY MEMBER
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