The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
- | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
Title | Journal | Pubmed ID |
---|---|---|
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
Gene ID | Description |
---|---|
Paelopatides43078 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
Paelopatides43079 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
Paelopatides43080 | G-PROTEIN COUPLED RECEPTOR |
Paelopatides43081 | NETRIN RECEPTOR UNC5 |
Paelopatides43082 | PROTEIN EURL HOMOLOG |
Paelopatides43083 | SORTING NEXIN-4 |
Paelopatides43084 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Paelopatides43085 | |
Paelopatides43086 | |
Paelopatides43087 | MATRIX METALLOPROTEINASE |
Paelopatides43088 | MATRIX METALLOPROTEINASE |
Paelopatides43089 | ZINC FINGER PROTEIN 200 |
Paelopatides43090 | PR DOMAIN ZINC FINGER PROTEIN |
Paelopatides43091 | ODD-SKIPPED - RELATED |
Paelopatides43092 | ZINC FINGER PROTEIN ZIC AND GLI |
Paelopatides43093 | ZINC FINGER PROTEIN |
Paelopatides43094 | ODD-SKIPPED - RELATED |
Paelopatides43095 | ODD-SKIPPED - RELATED |
Paelopatides43096 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
Paelopatides43097 | |
Paelopatides43098 | DDB1- AND CUL4-ASSOCIATED FACTOR 17 |
Paelopatides43099 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
Paelopatides43100 | TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER |
Paelopatides43101 | OPTIC ATROPHY 3 PROTEIN OPA3 |
Paelopatides43102 | |
Paelopatides43103 | |
Paelopatides43104 | |
Paelopatides43105 | |
Paelopatides43106 | PROTEIN CBG26694 |
Paelopatides43107 | PARANEOPLASTIC ANTIGEN |
Paelopatides43108 | PARANEOPLASTIC ANTIGEN |
Paelopatides43109 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Paelopatides43110 | |
Paelopatides43111 | |
Paelopatides43112 | RETROTRANSPOSON |
Paelopatides43113 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Paelopatides43114 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Paelopatides43115 | TUBULIN |
Paelopatides43116 | SOLUTE CARRIER FAMILY 22 MEMBER |
Paelopatides43117 | PREFOLDIN SUBUNIT 3 |
Paelopatides43118 | UNCHARACTERIZED |
Paelopatides43119 | PROTEIN CBG26694 |
Paelopatides43120 | PROTEIN CBG26694 |
Paelopatides43121 | UNCHARACTERIZED |
Paelopatides43122 | UNCHARACTERIZED |
Paelopatides43123 | DIACYLGLYCEROL KINASE |
Paelopatides43124 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
Paelopatides43126 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Paelopatides43127 | |
Paelopatides43128 | TRANSLATION ELONGATION FACTOR-RELATED |