The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides42921 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42922 | |
| Paelopatides42923 | PARAOXONASE |
| Paelopatides42924 | PARAOXONASE |
| Paelopatides42925 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
| Paelopatides42926 | PARAOXONASE |
| Paelopatides42927 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
| Paelopatides42928 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| Paelopatides42929 | |
| Paelopatides42930 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides42931 | |
| Paelopatides42932 | |
| Paelopatides42933 | RETROTRANSPOSON |
| Paelopatides42934 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42935 | PROTEIN CBG26694 |
| Paelopatides42936 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42937 | |
| Paelopatides42938 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides42939 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42940 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
| Paelopatides42941 | |
| Paelopatides42942 | UBIQUITIN |
| Paelopatides42943 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42944 | BUCENTAUR RELATED |
| Paelopatides42945 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42946 | |
| Paelopatides42947 | SIMILAR TO CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 (CHD-1) |
| Paelopatides42948 | |
| Paelopatides42949 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Paelopatides42950 | |
| Paelopatides42951 | ASPARAGINE SYNTHETASE |
| Paelopatides42952 | |
| Paelopatides42953 | CYTOKINE RECEPTOR |
| Paelopatides42954 | CYTOKINE RECEPTOR |
| Paelopatides42955 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42956 | CYTOKINE RECEPTOR |
| Paelopatides42957 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42958 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
| Paelopatides42959 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| Paelopatides42960 | |
| Paelopatides42961 | |
| Paelopatides42962 | RAS-RELATED PROTEIN RAB |
| Paelopatides42963 | ABC1 FAMILY PROTEIN |
| Paelopatides42964 | UBIQUITIN-ACTIVATING ENZYME E1 |
| Paelopatides42965 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Paelopatides42966 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42967 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42968 | E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED |
| Paelopatides42969 | SNARE PROTEINS |
| Paelopatides42970 | ENDONUCLEASE-RELATED |
