The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides42868 | GLYCOSYL HYDROLASE-RELATED |
| Paelopatides42869 | TAL1 SCL INTERRUPTING LOCUS |
| Paelopatides42870 | |
| Paelopatides42871 | |
| Paelopatides42872 | TAL1 SCL INTERRUPTING LOCUS |
| Paelopatides42873 | ANKYRIN REPEAT FAMILY PROTEIN |
| Paelopatides42874 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42875 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
| Paelopatides42876 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42877 | FAS-ASSOCIATED PROTEIN |
| Paelopatides42878 | |
| Paelopatides42879 | LSM1 |
| Paelopatides42880 | CALCYPHOSIN |
| Paelopatides42881 | UV EXCISION REPAIR PROTEIN RAD23 |
| Paelopatides42882 | PROTEIN CBG26694 |
| Paelopatides42883 | |
| Paelopatides42884 | |
| Paelopatides42885 | |
| Paelopatides42886 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
| Paelopatides42887 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
| Paelopatides42888 | ROPPORIN-1-LIKE PROTEIN |
| Paelopatides42889 | |
| Paelopatides42890 | TRANSPOSON |
| Paelopatides42891 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Paelopatides42892 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42893 | ENDONUCLEASE-RELATED |
| Paelopatides42894 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Paelopatides42897 | |
| Paelopatides42898 | FERM DOMAIN CONTAINING PROTEIN |
| Paelopatides42899 | |
| Paelopatides42900 | |
| Paelopatides42901 | - |
| Paelopatides42902 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Paelopatides42903 | |
| Paelopatides42904 | |
| Paelopatides42905 | |
| Paelopatides42906 | PROTEIN, PUTATIVE-RELATED |
| Paelopatides42907 | |
| Paelopatides42908 | |
| Paelopatides42909 | AMINE OXIDASE |
| Paelopatides42910 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| Paelopatides42911 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| Paelopatides42912 | |
| Paelopatides42914 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| Paelopatides42915 | CRUMBS FAMILY MEMBER |
| Paelopatides42916 | S-FORMYLGLUTATHIONE HYDROLASE |
| Paelopatides42917 | WD40 REPEAT PROTEIN |
| Paelopatides42918 | UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN |
| Paelopatides42919 | |
| Paelopatides42920 | ACYL-MALONYL CONDENSING ENZYME-RELATED |
