The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides42818 | |
| Paelopatides42819 | SI:CH211-108C17.2-RELATED-RELATED |
| Paelopatides42820 | |
| Paelopatides42821 | |
| Paelopatides42822 | |
| Paelopatides42823 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| Paelopatides42824 | |
| Paelopatides42825 | BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1 |
| Paelopatides42826 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| Paelopatides42827 | |
| Paelopatides42828 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Paelopatides42829 | OS06G0237300 PROTEIN |
| Paelopatides42830 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Paelopatides42831 | ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED |
| Paelopatides42832 | |
| Paelopatides42833 | 50S RIBOSOMAL PROTEIN L21 |
| Paelopatides42834 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Paelopatides42835 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Paelopatides42836 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Paelopatides42837 | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED |
| Paelopatides42838 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Paelopatides42839 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Paelopatides42840 | |
| Paelopatides42841 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Paelopatides42842 | |
| Paelopatides42843 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides42844 | |
| Paelopatides42845 | HOMEODOMAIN-ONLY PROTEIN |
| Paelopatides42846 | CARBOHYDRATE SULFOTRANSFERASE |
| Paelopatides42847 | INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING |
| Paelopatides42848 | CGI-12 PROTEIN-RELATED |
| Paelopatides42849 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED |
| Paelopatides42850 | PKSB |
| Paelopatides42851 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| Paelopatides42852 | |
| Paelopatides42853 | UPF0692 PROTEIN C19ORF54 |
| Paelopatides42854 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER |
| Paelopatides42855 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| Paelopatides42856 | HL07962P-RELATED |
| Paelopatides42857 | |
| Paelopatides42858 | HL07962P-RELATED |
| Paelopatides42859 | |
| Paelopatides42860 | DNA-DIRECTED RNA POLYMERASE II, III |
| Paelopatides42861 | PROTEIN CROWDED NUCLEI 4 |
| Paelopatides42862 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides42863 | |
| Paelopatides42864 | |
| Paelopatides42865 | GAG-RELATED PROTEIN |
| Paelopatides42866 | CYTOSOLIC REGULATOR PIANISSIMO |
| Paelopatides42867 |
