The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides39107 | |
| Paelopatides39108 | PROTEIN CBG26694 |
| Paelopatides39109 | LUNG SEVEN TRANSMEMBRANE RECEPTOR |
| Paelopatides39110 | |
| Paelopatides39111 | |
| Paelopatides39112 | |
| Paelopatides39113 | CYTOCHROME P450 508A4-RELATED |
| Paelopatides39114 | |
| Paelopatides39115 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| Paelopatides39116 | GREMLIN 1 |
| Paelopatides39117 | XANTHINE DEHYDROGENASE |
| Paelopatides39118 | OPSIN |
| Paelopatides39119 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39120 | INTEGRIN ALPHA |
| Paelopatides39121 | INTEGRIN ALPHA |
| Paelopatides39122 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39123 | NEPHRIN |
| Paelopatides39124 | NECTIN-RELATED |
| Paelopatides39125 | TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6 |
| Paelopatides39126 | GLYOXALASE FAMILY PROTEIN |
| Paelopatides39127 | MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG |
| Paelopatides39128 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39129 | GEMIN2 |
| Paelopatides39130 | TNF RECEPTOR ASSOCIATED FACTOR |
| Paelopatides39131 | |
| Paelopatides39132 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39133 | PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4 |
| Paelopatides39134 | GLYCOSYLTRANSFERASE |
| Paelopatides39135 | PROTEIN CBG26694 |
| Paelopatides39136 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Paelopatides39137 | TRANSMEMBRANE PROTEIN 121B |
| Paelopatides39138 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39139 | TRANSMEMBRANE PROTEIN 121B |
| Paelopatides39140 | |
| Paelopatides39141 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39142 | TORSIN-1A-INTERACTING PROTEIN |
| Paelopatides39143 | CASEIN KINASE-RELATED |
| Paelopatides39144 | PROTEIN CBG26694 |
| Paelopatides39145 | |
| Paelopatides39146 | |
| Paelopatides39147 | |
| Paelopatides39148 | |
| Paelopatides39149 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39150 | DUAL SPECIFICITY PROTEIN KINASE |
| Paelopatides39151 | |
| Paelopatides39152 | |
| Paelopatides39153 | F-BOX ONLY PROTEIN 4 |
| Paelopatides39154 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2 |
| Paelopatides39155 | SULFOTRANSFERASE SULT |
| Paelopatides39156 |
