The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides39266 | DIHYDRODIPICOLINATE SYNTHASE |
| Paelopatides39267 | |
| Paelopatides39268 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Paelopatides39269 | AGAP004327-PA |
| Paelopatides39270 | |
| Paelopatides39271 | AGAP004327-PA |
| Paelopatides39272 | |
| Paelopatides39273 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
| Paelopatides39274 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides39275 | |
| Paelopatides39276 | |
| Paelopatides39277 | CYTOKINE RECEPTOR |
| Paelopatides39278 | |
| Paelopatides39279 | CYTOKINE RECEPTOR |
| Paelopatides39280 | PROTEIN SIDEKICK |
| Paelopatides39281 | |
| Paelopatides39282 | ENDONUCLEASE |
| Paelopatides39283 | MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7 |
| Paelopatides39284 | RIBONUCLEASE |
| Paelopatides39285 | MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7 |
| Paelopatides39286 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39287 | |
| Paelopatides39288 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39289 | |
| Paelopatides39290 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides39291 | PROTEIN CBG26694 |
| Paelopatides39292 | |
| Paelopatides39293 | |
| Paelopatides39294 | IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C |
| Paelopatides39295 | UNCHARACTERIZED |
| Paelopatides39296 | AGAP003327-PA |
| Paelopatides39297 | AGAP003327-PA |
| Paelopatides39298 | ANTIGEN BSP, PUTATIVE-RELATED |
| Paelopatides39299 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39300 | RETROTRANSPOSON |
| Paelopatides39301 | E3 UBIQUITIN-PROTEIN LIGASE TRIM |
| Paelopatides39302 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides39303 | |
| Paelopatides39304 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39305 | |
| Paelopatides39306 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| Paelopatides39307 | |
| Paelopatides39308 | SRCR DOMAIN-CONTAINING PROTEIN |
| Paelopatides39309 | |
| Paelopatides39310 | |
| Paelopatides39311 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Paelopatides39312 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
| Paelopatides39313 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides39317 | |
| Paelopatides39318 |
