The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides39319 | |
| Paelopatides39320 | |
| Paelopatides39321 | |
| Paelopatides39323 | ATP-DEPENDENT PROTEASE |
| Paelopatides39324 | |
| Paelopatides39325 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides39326 | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN |
| Paelopatides39327 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39328 | - |
| Paelopatides39329 | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN |
| Paelopatides39330 | SMALL INTEGRAL MEMBRANE PROTEIN 13 |
| Paelopatides39331 | |
| Paelopatides39332 | BONUS, ISOFORM C-RELATED |
| Paelopatides39333 | DNAJ-LIKE-2, ISOFORM A-RELATED |
| Paelopatides39334 | POLYCYSTIN FAMILY MEMBER |
| Paelopatides39335 | TRANSMEMBRANE PROTEIN 208 |
| Paelopatides39336 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| Paelopatides39337 | ATP-DEPENDENT PROTEASE |
| Paelopatides39338 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides39339 | PROTEIN CBG26694 |
| Paelopatides39340 | HELICASE WITH DEATH DOMAIN-RELATED |
| Paelopatides39341 | PROTEIN CBG26694 |
| Paelopatides39342 | |
| Paelopatides39343 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| Paelopatides39344 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39345 | |
| Paelopatides39346 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39347 | NOP14 |
| Paelopatides39348 | NOP14 |
| Paelopatides39349 | |
| Paelopatides39350 | |
| Paelopatides39351 | |
| Paelopatides39352 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39353 | |
| Paelopatides39354 | |
| Paelopatides39355 | LIM DOMAIN-CONTAINING PROTEIN |
| Paelopatides39356 | |
| Paelopatides39357 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
| Paelopatides39358 | |
| Paelopatides39359 | OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED |
| Paelopatides39360 | |
| Paelopatides39361 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| Paelopatides39362 | |
| Paelopatides39363 | CARBOHYDRATE SULFOTRANSFERASE 15 |
| Paelopatides39364 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
| Paelopatides39365 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Paelopatides39366 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39367 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides39368 | |
| Paelopatides39369 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
