Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_036630-T1 | |
LLU|FUN_036631-T1 | |
LLU|FUN_036632-T1 | VACUOLAR PROTON ATPASES |
LLU|FUN_036633-T1 | VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN |
LLU|FUN_036634-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_036635-T1 | |
LLU|FUN_036636-T1 | |
LLU|FUN_036637-T1 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
LLU|FUN_036638-T1 | |
LLU|FUN_036639-T1 | |
LLU|FUN_036640-T1 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_036641-T1 | |
LLU|FUN_036642-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
LLU|FUN_036643-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
LLU|FUN_036644-T1 | NINJURIN-RELATED |
LLU|FUN_036645-T1 | |
LLU|FUN_036646-T1 | |
LLU|FUN_036647-T1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
LLU|FUN_036648-T1 | RAB FAMILY |
LLU|FUN_036649-T1 | TUBULIN |
LLU|FUN_036650-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
LLU|FUN_036651-T1 | |
LLU|FUN_036652-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
LLU|FUN_036653-T1 | TUBULIN |
LLU|FUN_036654-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
LLU|FUN_036655-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_036656-T1 | |
LLU|FUN_036657-T1 | |
LLU|FUN_036658-T1 | |
LLU|FUN_036659-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
LLU|FUN_036660-T1 | ORGANIC ANION TRANSPORTER |
LLU|FUN_036661-T1 | TRYPTASE-RELATED |
LLU|FUN_036662-T1 | POLYSERASE-RELATED |
LLU|FUN_036663-T1 | PROLYL ENDOPEPTIDASE |
LLU|FUN_036664-T1 | TUDOR DOMAIN CONTAINING PROTEIN |
LLU|FUN_036665-T1 | |
LLU|FUN_036666-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
LLU|FUN_036667-T1 | |
LLU|FUN_036668-T1 | |
LLU|FUN_036669-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_036670-T1 | |
LLU|FUN_036671-T1 | |
LLU|FUN_036672-T1 | |
LLU|FUN_036673-T1 | |
LLU|FUN_036674-T1 | |
LLU|FUN_036675-T1 | |
LLU|FUN_036676-T1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
LLU|FUN_036677-T1 | |
LLU|FUN_036678-T1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
LLU|FUN_036679-T1 | CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER |