About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_036630-T1
LLU|FUN_036631-T1
LLU|FUN_036632-T1VACUOLAR PROTON ATPASES
LLU|FUN_036633-T1VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN
LLU|FUN_036634-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_036635-T1
LLU|FUN_036636-T1
LLU|FUN_036637-T1CHROMOSOME 20 ORF85 FAMILY MEMBER
LLU|FUN_036638-T1
LLU|FUN_036639-T1
LLU|FUN_036640-T1ABHYDROLASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_036641-T1
LLU|FUN_036642-T1CYSTEINE PROTEASE FAMILY C1-RELATED
LLU|FUN_036643-T1CYSTEINE PROTEASE FAMILY C1-RELATED
LLU|FUN_036644-T1NINJURIN-RELATED
LLU|FUN_036645-T1
LLU|FUN_036646-T1
LLU|FUN_036647-T1NICOTINATE PHOSPHORIBOSYLTRANSFERASE
LLU|FUN_036648-T1RAB FAMILY
LLU|FUN_036649-T1TUBULIN
LLU|FUN_036650-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
LLU|FUN_036651-T1
LLU|FUN_036652-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
LLU|FUN_036653-T1TUBULIN
LLU|FUN_036654-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
LLU|FUN_036655-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_036656-T1
LLU|FUN_036657-T1
LLU|FUN_036658-T1
LLU|FUN_036659-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
LLU|FUN_036660-T1ORGANIC ANION TRANSPORTER
LLU|FUN_036661-T1TRYPTASE-RELATED
LLU|FUN_036662-T1POLYSERASE-RELATED
LLU|FUN_036663-T1PROLYL ENDOPEPTIDASE
LLU|FUN_036664-T1TUDOR DOMAIN CONTAINING PROTEIN
LLU|FUN_036665-T1
LLU|FUN_036666-T1SOLUTE CARRIER FAMILY 22 MEMBER
LLU|FUN_036667-T1
LLU|FUN_036668-T1
LLU|FUN_036669-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
LLU|FUN_036670-T1
LLU|FUN_036671-T1
LLU|FUN_036672-T1
LLU|FUN_036673-T1
LLU|FUN_036674-T1
LLU|FUN_036675-T1
LLU|FUN_036676-T1C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED
LLU|FUN_036677-T1
LLU|FUN_036678-T1ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
LLU|FUN_036679-T1CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER
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