About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_036327-T1TNF RECEPTOR ASSOCIATED FACTOR
LLU|FUN_036328-T1
LLU|FUN_036329-T1RGD1565685 PROTEIN
LLU|FUN_036330-T1
LLU|FUN_036331-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
LLU|FUN_036332-T1
LLU|FUN_036333-T1
LLU|FUN_036334-T1
LLU|FUN_036335-T1NUCLEAR HORMONE RECEPTOR
LLU|FUN_036336-T1
LLU|FUN_036337-T1
LLU|FUN_036338-T1
LLU|FUN_036339-T1
LLU|FUN_036341-T1ENOLASE
LLU|FUN_036342-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53
LLU|FUN_036343-T1
LLU|FUN_036344-T1ZGC:174356
LLU|FUN_036345-T1ZGC:174356
LLU|FUN_036346-T1
LLU|FUN_036347-T1ZGC:174356
LLU|FUN_036348-T1ZGC:174356
LLU|FUN_036349-T1
LLU|FUN_036350-T1
LLU|FUN_036351-T1ZGC:174356
LLU|FUN_036352-T1
LLU|FUN_036353-T1ZGC:174356
LLU|FUN_036354-T1ZGC:174356
LLU|FUN_036355-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_036356-T1
LLU|FUN_036357-T1
LLU|FUN_036358-T1
LLU|FUN_036359-T1
LLU|FUN_036360-T1ZGC:174356
LLU|FUN_036361-T1
LLU|FUN_036362-T1
LLU|FUN_036363-T1
LLU|FUN_036364-T1
LLU|FUN_036365-T1
LLU|FUN_036366-T1
LLU|FUN_036367-T1
LLU|FUN_036368-T1SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED
LLU|FUN_036369-T1
LLU|FUN_036370-T1
LLU|FUN_036371-T1PLASMINOGEN-RELATED
LLU|FUN_036372-T1YNEIN REGULATORY COMPLEX SUBUNIT 5
LLU|FUN_036373-T1PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5
LLU|FUN_036374-T1PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5
LLU|FUN_036375-T1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
LLU|FUN_036376-T1PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1
LLU|FUN_036377-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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