About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9847
Clavulariidae_g9848
Clavulariidae_g9849
Clavulariidae_g985
Clavulariidae_g9850SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9851ZGC:195170
Clavulariidae_g9852PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9853PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9854
Clavulariidae_g9855REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9856TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9857INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9858
Clavulariidae_g9859PROTEIN CBG23764
Clavulariidae_g986TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9860COLLAGEN ALPHA
Clavulariidae_g9861
Clavulariidae_g9862
Clavulariidae_g9863PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9864TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9865
Clavulariidae_g9866
Clavulariidae_g9867
Clavulariidae_g9868REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9869
Clavulariidae_g987
Clavulariidae_g9870
Clavulariidae_g9871DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9872RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9873SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9874
Clavulariidae_g9875HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g9876
Clavulariidae_g9877
Clavulariidae_g9878RETROTRANSPOSON
Clavulariidae_g9879PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g988TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9880PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9881PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9882
Clavulariidae_g9883PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9884C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9885PROTEIN CBG23806
Clavulariidae_g9886
Clavulariidae_g9887ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9888TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9889REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g989
Clavulariidae_g9890
Clavulariidae_g9891PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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