Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g9847 | |
Clavulariidae_g9848 | |
Clavulariidae_g9849 | |
Clavulariidae_g985 | |
Clavulariidae_g9850 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g9851 | ZGC:195170 |
Clavulariidae_g9852 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9853 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9854 | |
Clavulariidae_g9855 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9856 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g9857 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9858 | |
Clavulariidae_g9859 | PROTEIN CBG23764 |
Clavulariidae_g986 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g9860 | COLLAGEN ALPHA |
Clavulariidae_g9861 | |
Clavulariidae_g9862 | |
Clavulariidae_g9863 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9864 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g9865 | |
Clavulariidae_g9866 | |
Clavulariidae_g9867 | |
Clavulariidae_g9868 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9869 | |
Clavulariidae_g987 | |
Clavulariidae_g9870 | |
Clavulariidae_g9871 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9872 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9873 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g9874 | |
Clavulariidae_g9875 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Clavulariidae_g9876 | |
Clavulariidae_g9877 | |
Clavulariidae_g9878 | RETROTRANSPOSON |
Clavulariidae_g9879 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g988 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g9880 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9881 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9882 | |
Clavulariidae_g9883 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9884 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9885 | PROTEIN CBG23806 |
Clavulariidae_g9886 | |
Clavulariidae_g9887 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9888 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g9889 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g989 | |
Clavulariidae_g9890 | |
Clavulariidae_g9891 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |