About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9621
Clavulariidae_g9622
Clavulariidae_g9623
Clavulariidae_g9624
Clavulariidae_g9625
Clavulariidae_g9626THAP DOMAIN PROTEIN
Clavulariidae_g9627RETROTRANSPOSON
Clavulariidae_g9628
Clavulariidae_g9629ZGC:195170
Clavulariidae_g963
Clavulariidae_g9630SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9631
Clavulariidae_g9632REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9633
Clavulariidae_g9634
Clavulariidae_g9635NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g9636
Clavulariidae_g9637PROTEIN CBG26694
Clavulariidae_g9638
Clavulariidae_g9639
Clavulariidae_g964EXPRESSED PROTEIN
Clavulariidae_g9640NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g9641RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9642-
Clavulariidae_g9643DNA POLYMERASE
Clavulariidae_g9644
Clavulariidae_g9645
Clavulariidae_g9646
Clavulariidae_g9647
Clavulariidae_g9648RETROTRANSPOSON
Clavulariidae_g9649
Clavulariidae_g965
Clavulariidae_g9650
Clavulariidae_g9651EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9652THAP DOMAIN PROTEIN
Clavulariidae_g9653PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9654ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9655INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g9656
Clavulariidae_g9657PROTEIN CBG26694
Clavulariidae_g9658C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9659
Clavulariidae_g966TRANSPOSASE-RELATED
Clavulariidae_g9660
Clavulariidae_g9661
Clavulariidae_g9662PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g9663PROTEIN CBG26694
Clavulariidae_g9664ENDONUCLEASE-RELATED
Clavulariidae_g9665
Clavulariidae_g9666
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