About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9487
Clavulariidae_g9488EXPRESSED PROTEIN
Clavulariidae_g9489
Clavulariidae_g949ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9490
Clavulariidae_g9491PROTEIN CBG26694
Clavulariidae_g9492
Clavulariidae_g9493EXPRESSED PROTEIN
Clavulariidae_g9494TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9495
Clavulariidae_g9496HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g9497HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g9498REVERSE TRANSCRIPTASES
Clavulariidae_g9499
Clavulariidae_g95RETROTRANSPOSON
Clavulariidae_g950THAP DOMAIN PROTEIN
Clavulariidae_g9500
Clavulariidae_g9501
Clavulariidae_g9502
Clavulariidae_g9503
Clavulariidae_g9504C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9505
Clavulariidae_g9506
Clavulariidae_g9507
Clavulariidae_g9508
Clavulariidae_g9509
Clavulariidae_g951EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9510DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g9511
Clavulariidae_g9512
Clavulariidae_g9513REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9514C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9515
Clavulariidae_g9516
Clavulariidae_g9517L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g9518REVERSE TRANSCRIPTASES
Clavulariidae_g9519
Clavulariidae_g952DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9520
Clavulariidae_g9521UNCHARACTERIZED
Clavulariidae_g9522
Clavulariidae_g9523
Clavulariidae_g9524CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9525CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9526RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9527
Clavulariidae_g9528
Clavulariidae_g9529ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g953PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9530C2H2-TYPE DOMAIN-CONTAINING PROTEIN
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