About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9397EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g9398ATP-DEPENDENT DNA HELICASE
Clavulariidae_g9399BEN DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g94
Clavulariidae_g940ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9400F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9401EXPRESSED PROTEIN
Clavulariidae_g9402
Clavulariidae_g9403
Clavulariidae_g9404
Clavulariidae_g9405REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9406SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g9407ZINC FINGER PROTEIN ZIC AND GLI
Clavulariidae_g9408
Clavulariidae_g9409
Clavulariidae_g941RETROTRANSPOSON
Clavulariidae_g9410CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9411REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9412
Clavulariidae_g9413
Clavulariidae_g9414
Clavulariidae_g9415
Clavulariidae_g9416
Clavulariidae_g9417
Clavulariidae_g9418EXPRESSED PROTEIN
Clavulariidae_g9419
Clavulariidae_g942REVERSE TRANSCRIPTASE
Clavulariidae_g9420
Clavulariidae_g9421
Clavulariidae_g9422
Clavulariidae_g9423
Clavulariidae_g9424
Clavulariidae_g9425EPM2A-INTERACTING PROTEIN 1
Clavulariidae_g9426EPM2A-INTERACTING PROTEIN 1
Clavulariidae_g9427THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g9428TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g9429CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g943ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9430CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9431INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9432
Clavulariidae_g9433PROTEIN CBG26694
Clavulariidae_g9434
Clavulariidae_g9435
Clavulariidae_g9436
Clavulariidae_g9437RETROTRANSPOSON
Clavulariidae_g9438
Clavulariidae_g9439ZGC:195170
Clavulariidae_g944
Clavulariidae_g9440SI:CH211-108C17.2-RELATED-RELATED
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