About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9351RETROTRANSPOSON
Clavulariidae_g9352RETROTRANSPOSON
Clavulariidae_g9353RETROTRANSPOSON
Clavulariidae_g9354
Clavulariidae_g9355
Clavulariidae_g9356RETROTRANSPOSON
Clavulariidae_g9357PROTEIN CBG26694
Clavulariidae_g9358RETROTRANSPOSON
Clavulariidae_g9359REVERSE TRANSCRIPTASES
Clavulariidae_g936
Clavulariidae_g9360
Clavulariidae_g9361
Clavulariidae_g9362DNA HELICASE-RELATED
Clavulariidae_g9363
Clavulariidae_g9364RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9365
Clavulariidae_g9366
Clavulariidae_g9367
Clavulariidae_g9368THAP DOMAIN PROTEIN
Clavulariidae_g9369INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g937
Clavulariidae_g9370EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g9371
Clavulariidae_g9372RETROTRANSPOSON
Clavulariidae_g9373
Clavulariidae_g9374EXPRESSED PROTEIN
Clavulariidae_g9375CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9376CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9377
Clavulariidae_g9378-
Clavulariidae_g9379THAP DOMAIN PROTEIN
Clavulariidae_g938REVERSE TRANSCRIPTASES
Clavulariidae_g9380
Clavulariidae_g9381
Clavulariidae_g9382RETROTRANSPOSON
Clavulariidae_g9383RETROTRANSPOSON
Clavulariidae_g9384
Clavulariidae_g9385TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9386
Clavulariidae_g9387
Clavulariidae_g9388SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9389
Clavulariidae_g939
Clavulariidae_g9390
Clavulariidae_g9391
Clavulariidae_g9392
Clavulariidae_g9393
Clavulariidae_g9394REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9395HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g9396HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
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