About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9306ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9307
Clavulariidae_g9308INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9309
Clavulariidae_g931
Clavulariidae_g9310
Clavulariidae_g9311REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9312ATP-DEPENDENT DNA HELICASE
Clavulariidae_g9313REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9314RETROTRANSPOSON
Clavulariidae_g9315PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9316PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9317
Clavulariidae_g9318PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g9319
Clavulariidae_g932PROTEIN CBG26694
Clavulariidae_g9320
Clavulariidae_g9321
Clavulariidae_g9322
Clavulariidae_g9323
Clavulariidae_g9324CXXC-TYPE ZINC FINGER PROTEIN 1
Clavulariidae_g9325
Clavulariidae_g9326KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g9327PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9328
Clavulariidae_g9329PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g933-
Clavulariidae_g9330-
Clavulariidae_g9331
Clavulariidae_g9332PROTEIN CBG23764
Clavulariidae_g9333REVERSE TRANSCRIPTASES
Clavulariidae_g9334SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g9335TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g9336
Clavulariidae_g9337HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g9338ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9339
Clavulariidae_g934
Clavulariidae_g9340SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9341DNA HELICASE-RELATED
Clavulariidae_g9342C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9343TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9344AGAP001331-PA-RELATED
Clavulariidae_g9345
Clavulariidae_g9346
Clavulariidae_g9347ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9348PROTEIN CBG26694
Clavulariidae_g9349DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g935
Clavulariidae_g9350C2H2-TYPE DOMAIN-CONTAINING PROTEIN
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