Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g9306 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9307 | |
Clavulariidae_g9308 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9309 | |
Clavulariidae_g931 | |
Clavulariidae_g9310 | |
Clavulariidae_g9311 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9312 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g9313 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9314 | RETROTRANSPOSON |
Clavulariidae_g9315 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9316 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9317 | |
Clavulariidae_g9318 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Clavulariidae_g9319 | |
Clavulariidae_g932 | PROTEIN CBG26694 |
Clavulariidae_g9320 | |
Clavulariidae_g9321 | |
Clavulariidae_g9322 | |
Clavulariidae_g9323 | |
Clavulariidae_g9324 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
Clavulariidae_g9325 | |
Clavulariidae_g9326 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
Clavulariidae_g9327 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9328 | |
Clavulariidae_g9329 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g933 | - |
Clavulariidae_g9330 | - |
Clavulariidae_g9331 | |
Clavulariidae_g9332 | PROTEIN CBG23764 |
Clavulariidae_g9333 | REVERSE TRANSCRIPTASES |
Clavulariidae_g9334 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g9335 | TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN |
Clavulariidae_g9336 | |
Clavulariidae_g9337 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Clavulariidae_g9338 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9339 | |
Clavulariidae_g934 | |
Clavulariidae_g9340 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g9341 | DNA HELICASE-RELATED |
Clavulariidae_g9342 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9343 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g9344 | AGAP001331-PA-RELATED |
Clavulariidae_g9345 | |
Clavulariidae_g9346 | |
Clavulariidae_g9347 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g9348 | PROTEIN CBG26694 |
Clavulariidae_g9349 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g935 | |
Clavulariidae_g9350 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |