About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9577RETROTRANSPOSON
Clavulariidae_g9578RETROTRANSPOSON
Clavulariidae_g9579
Clavulariidae_g958F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9580CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9581CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9582-
Clavulariidae_g9583
Clavulariidae_g9584DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Clavulariidae_g9585PUTATIVE-RELATED
Clavulariidae_g9586EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9587THAP DOMAIN PROTEIN
Clavulariidae_g9588HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g9589
Clavulariidae_g959
Clavulariidae_g9590
Clavulariidae_g9591GLR0591 PROTEIN
Clavulariidae_g9592
Clavulariidae_g9593
Clavulariidae_g9594ZGC:195170
Clavulariidae_g9595SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9596
Clavulariidae_g9597
Clavulariidae_g9598
Clavulariidae_g9599EXPRESSED PROTEIN
Clavulariidae_g96
Clavulariidae_g960
Clavulariidae_g9600TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9601EXPRESSED PROTEIN
Clavulariidae_g9602
Clavulariidae_g9603
Clavulariidae_g9604SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9605ZGC:195170
Clavulariidae_g9606REVERSE TRANSCRIPTASES
Clavulariidae_g9607
Clavulariidae_g9608
Clavulariidae_g9609PROTEIN CBG26694
Clavulariidae_g961PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9610SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g9611
Clavulariidae_g9612SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9613
Clavulariidae_g9614
Clavulariidae_g9615
Clavulariidae_g9616
Clavulariidae_g9617REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9618PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9619
Clavulariidae_g962
Clavulariidae_g9620RETROTRANSPOSON
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