About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9667
Clavulariidae_g9668
Clavulariidae_g9669PROTEIN CBG23806
Clavulariidae_g967
Clavulariidae_g9670
Clavulariidae_g9671
Clavulariidae_g9672
Clavulariidae_g9673
Clavulariidae_g9674TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g9675ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9676EXPRESSED PROTEIN
Clavulariidae_g9677HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g9678
Clavulariidae_g9679
Clavulariidae_g968
Clavulariidae_g9680
Clavulariidae_g9681
Clavulariidae_g9682
Clavulariidae_g9683REVERSE TRANSCRIPTASES
Clavulariidae_g9684
Clavulariidae_g9685-
Clavulariidae_g9686CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9687
Clavulariidae_g9688CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9689
Clavulariidae_g969
Clavulariidae_g9690
Clavulariidae_g9691ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9692
Clavulariidae_g9693
Clavulariidae_g9694CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9695ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g9696
Clavulariidae_g9697INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9698
Clavulariidae_g9699
Clavulariidae_g97
Clavulariidae_g970
Clavulariidae_g9700REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9701
Clavulariidae_g9702
Clavulariidae_g9703
Clavulariidae_g9704REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9705SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9706THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g9707SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9708SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9709
Clavulariidae_g971
Clavulariidae_g9710
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