About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9801PROTEIN CBG26694
Clavulariidae_g9802PROTEIN CBG26694
Clavulariidae_g9803ATP-DEPENDENT DNA HELICASE
Clavulariidae_g9804ATP-DEPENDENT DNA HELICASE
Clavulariidae_g9805
Clavulariidae_g9806
Clavulariidae_g9807ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9808DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g9809
Clavulariidae_g981
Clavulariidae_g9810
Clavulariidae_g9811PROTEIN CBG23764
Clavulariidae_g9812UNCHARACTERIZED
Clavulariidae_g9813DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9814
Clavulariidae_g9815PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g9816RETROTRANSPOSON
Clavulariidae_g9817ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9818
Clavulariidae_g9819
Clavulariidae_g982
Clavulariidae_g9820
Clavulariidae_g9821PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9822
Clavulariidae_g9823
Clavulariidae_g9824
Clavulariidae_g9825HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g9826ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9827
Clavulariidae_g9828TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9829RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g983
Clavulariidae_g9830DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9831
Clavulariidae_g9832
Clavulariidae_g9833
Clavulariidae_g9834EXPRESSED PROTEIN
Clavulariidae_g9835TRANSPOSASE
Clavulariidae_g9836
Clavulariidae_g9837PUTATIVE-RELATED
Clavulariidae_g9838
Clavulariidae_g9839CASEIN KINASE-RELATED
Clavulariidae_g984
Clavulariidae_g9840RETROTRANSPOSON
Clavulariidae_g9841
Clavulariidae_g9842RETROTRANSPOSON
Clavulariidae_g9843CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9844HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g9845PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9846ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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