About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9937PROTEIN CBG26694
Clavulariidae_g9938
Clavulariidae_g9939
Clavulariidae_g994
Clavulariidae_g9940
Clavulariidae_g9941
Clavulariidae_g9942RETROTRANSPOSON
Clavulariidae_g9943INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9944
Clavulariidae_g9945
Clavulariidae_g9946
Clavulariidae_g9947
Clavulariidae_g9948F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9949
Clavulariidae_g995CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9950
Clavulariidae_g9951HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g9952
Clavulariidae_g9953EXPRESSED PROTEIN
Clavulariidae_g9954ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9955PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9956ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9957
Clavulariidae_g9958
Clavulariidae_g9959SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g996-
Clavulariidae_g9960
Clavulariidae_g9961
Clavulariidae_g9962
Clavulariidae_g9963
Clavulariidae_g9964PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9965
Clavulariidae_g9966
Clavulariidae_g9967
Clavulariidae_g9968TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Clavulariidae_g9969C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g997EXPRESSED PROTEIN
Clavulariidae_g9970C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9971ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9972TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g9973
Clavulariidae_g9974EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g9975EXPRESSED PROTEIN
Clavulariidae_g9976FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9977
Clavulariidae_g9978
Clavulariidae_g9979
Clavulariidae_g998HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g9980
Clavulariidae_g9981
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