About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9757THAP DOMAIN-CONTAINING
Clavulariidae_g9758ZGC:195170
Clavulariidae_g9759
Clavulariidae_g976
Clavulariidae_g9760REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9761
Clavulariidae_g9762
Clavulariidae_g9763
Clavulariidae_g9764
Clavulariidae_g9765PROTEIN CBG26694
Clavulariidae_g9766ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9767
Clavulariidae_g9768
Clavulariidae_g9769
Clavulariidae_g977
Clavulariidae_g9770
Clavulariidae_g9771PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9772RETROTRANSPOSON
Clavulariidae_g9773ZGC:195170
Clavulariidae_g9774
Clavulariidae_g9775TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g9776
Clavulariidae_g9777
Clavulariidae_g9778SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9779
Clavulariidae_g978
Clavulariidae_g9780NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g9781TRANSPOSON
Clavulariidae_g9782
Clavulariidae_g9783
Clavulariidae_g9784REVERSE TRANSCRIPTASES
Clavulariidae_g9785
Clavulariidae_g9786
Clavulariidae_g9787ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9788
Clavulariidae_g9789
Clavulariidae_g979PROTEIN, PUTATIVE-RELATED
Clavulariidae_g9790
Clavulariidae_g9791
Clavulariidae_g9792COLLAGEN ALPHA
Clavulariidae_g9793DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g9794DNA POLYMERASE
Clavulariidae_g9795REVERSE TRANSCRIPTASES
Clavulariidae_g9796
Clavulariidae_g9797SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g9798C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9799
Clavulariidae_g98REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g980REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9800C2H2-TYPE DOMAIN-CONTAINING PROTEIN
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