About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g9892DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g9893UNCHARACTERIZED
Clavulariidae_g9894
Clavulariidae_g9895RELA-ASSOCIATED INHIBITOR
Clavulariidae_g9896
Clavulariidae_g9897EXPRESSED PROTEIN
Clavulariidae_g9898REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9899TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g99REVERSE TRANSCRIPTASES
Clavulariidae_g990
Clavulariidae_g9900ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9901
Clavulariidae_g9902RETROTRANSPOSON
Clavulariidae_g9903PROTEIN CBG23764
Clavulariidae_g9904REVERSE TRANSCRIPTASES
Clavulariidae_g9905RETROTRANSPOSON
Clavulariidae_g9906
Clavulariidae_g9907
Clavulariidae_g9908
Clavulariidae_g9909TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g991ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g9910-
Clavulariidae_g9911DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g9912
Clavulariidae_g9913KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g9914
Clavulariidae_g9915TRANSPOSASE
Clavulariidae_g9916
Clavulariidae_g9917
Clavulariidae_g9918
Clavulariidae_g9919
Clavulariidae_g992
Clavulariidae_g9920INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9921
Clavulariidae_g9922PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g9923PROTEIN CBG26694
Clavulariidae_g9924
Clavulariidae_g9925CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g9926PROTEIN CBG23806
Clavulariidae_g9927
Clavulariidae_g9928
Clavulariidae_g9929
Clavulariidae_g993TRANSPOSASE
Clavulariidae_g9930
Clavulariidae_g9931RETROTRANSPOSON
Clavulariidae_g9932
Clavulariidae_g9933CELL DEATH ACTIVATOR CIDE
Clavulariidae_g9934REVERSE TRANSCRIPTASES
Clavulariidae_g9935TRANSPOSASE-RELATED
Clavulariidae_g9936
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