Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_029339-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029340-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029341-T1 | |
LLU|FUN_029342-T1 | |
LLU|FUN_029343-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
LLU|FUN_029344-T1 | |
LLU|FUN_029345-T1 | |
LLU|FUN_029346-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_029347-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_029348-T1 | |
LLU|FUN_029349-T1 | |
LLU|FUN_029350-T1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
LLU|FUN_029351-T1 | |
LLU|FUN_029352-T1 | ACYL-COA-BINDING PROTEIN, ACBP |
LLU|FUN_029353-T1 | |
LLU|FUN_029354-T1 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
LLU|FUN_029355-T1 | |
LLU|FUN_029356-T1 | TGF-BETA FAMILY |
LLU|FUN_029357-T1 | |
LLU|FUN_029358-T1 | HEPARAN SULFATE SULFOTRANSFERASE |
LLU|FUN_029359-T1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
LLU|FUN_029360-T1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 |
LLU|FUN_029361-T1 | |
LLU|FUN_029362-T1 | |
LLU|FUN_029363-T1 | MOLTING PROTEIN MLT-4 |
LLU|FUN_029364-T1 | |
LLU|FUN_029365-T1 | |
LLU|FUN_029366-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
LLU|FUN_029367-T1 | |
LLU|FUN_029368-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
LLU|FUN_029369-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
LLU|FUN_029370-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
LLU|FUN_029371-T1 | HEPARAN SULFATE SULFOTRANSFERASE |
LLU|FUN_029372-T1 | |
LLU|FUN_029373-T1 | BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 |
LLU|FUN_029374-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
LLU|FUN_029375-T1 | |
LLU|FUN_029376-T1 | ACROSIN-RELATED |
LLU|FUN_029377-T1 | |
LLU|FUN_029378-T1 | LD44762P |
LLU|FUN_029379-T1 | |
LLU|FUN_029380-T1 | |
LLU|FUN_029381-T1 | |
LLU|FUN_029382-T1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
LLU|FUN_029383-T1 | ENDONUCLEASE III-LIKE PROTEIN 1 |
LLU|FUN_029384-T1 | |
LLU|FUN_029385-T1 | |
LLU|FUN_029386-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029387-T1 | |
LLU|FUN_029388-T1 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |