About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_029239-T1
LLU|FUN_029240-T1
LLU|FUN_029241-T1GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
LLU|FUN_029242-T1
LLU|FUN_029243-T1
LLU|FUN_029244-T1URACIL-DNA GLYCOSYLASE
LLU|FUN_029245-T1SWI5-DEPENDENT RECOMBINATION DNA REPAIR PROTEIN 1 HOMOLOG
LLU|FUN_029246-T1
LLU|FUN_029247-T1ASPARTATE AMINOTRANSFERASE
LLU|FUN_029248-T1ASPARTATE AMINOTRANSFERASE
LLU|FUN_029249-T1
LLU|FUN_029250-T1O-GLCNACASE
LLU|FUN_029251-T1O-GLCNACASE
LLU|FUN_029252-T1TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED
LLU|FUN_029253-T1SMALL NUCLEAR RIBONUCLEOPROTEIN
LLU|FUN_029254-T1
LLU|FUN_029255-T1HVA22-LIKE PROTEINS
LLU|FUN_029256-T1
LLU|FUN_029257-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
LLU|FUN_029258-T1
LLU|FUN_029259-T1
LLU|FUN_029260-T1
LLU|FUN_029261-T1
LLU|FUN_029262-T1GLYCOSYL HYDROLASE-RELATED
LLU|FUN_029263-T1
LLU|FUN_029264-T1
LLU|FUN_029265-T1
LLU|FUN_029266-T1ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
LLU|FUN_029267-T1ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
LLU|FUN_029268-T1ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
LLU|FUN_029269-T1TRANSFERASE, PUTATIVE-RELATED
LLU|FUN_029270-T1
LLU|FUN_029271-T1
LLU|FUN_029272-T1
LLU|FUN_029273-T1
LLU|FUN_029274-T1
LLU|FUN_029275-T1MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
LLU|FUN_029276-T1MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
LLU|FUN_029277-T1
LLU|FUN_029278-T1
LLU|FUN_029279-T1COLLAGEN ALPHA
LLU|FUN_029280-T1
LLU|FUN_029281-T1SODIUM/NUCLEOSIDE COTRANSPORTER
LLU|FUN_029282-T1CBF1 INTERACTING COREPRESSOR CIR
LLU|FUN_029283-T1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
LLU|FUN_029284-T1MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
LLU|FUN_029285-T1
LLU|FUN_029286-T1ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_029287-T1ZGC:101016
LLU|FUN_029288-T1
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