Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_029139-T1 | |
LLU|FUN_029140-T1 | PROMININ PROM PROTEIN |
LLU|FUN_029141-T1 | |
LLU|FUN_029142-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_029143-T1 | |
LLU|FUN_029144-T1 | |
LLU|FUN_029145-T1 | POLYCOMB GROUP PROTEIN |
LLU|FUN_029146-T1 | NADH-UBIQUINONE OXIDOREDUCTASE B15 SUBUNIT |
LLU|FUN_029147-T1 | CELL DIVISION PROTEIN KINASE |
LLU|FUN_029148-T1 | S-ADENOSYLMETHIONINE DECARBOXYLASE |
LLU|FUN_029149-T1 | S-ADENOSYLMETHIONINE DECARBOXYLASE |
LLU|FUN_029150-T1 | CITRATE LYASE SUBUNIT BETA-RELATED |
LLU|FUN_029151-T1 | |
LLU|FUN_029152-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
LLU|FUN_029153-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
LLU|FUN_029154-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
LLU|FUN_029155-T1 | MIDASIN-RELATED |
LLU|FUN_029156-T1 | |
LLU|FUN_029157-T1 | MIDASIN-RELATED |
LLU|FUN_029158-T1 | MIDASIN-RELATED |
LLU|FUN_029159-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
LLU|FUN_029160-T1 | MIDASIN-RELATED |
LLU|FUN_029161-T1 | MIDASIN-RELATED |
LLU|FUN_029162-T1 | |
LLU|FUN_029163-T1 | |
LLU|FUN_029164-T1 | SETA BINDING PROTEIN 1 |
LLU|FUN_029165-T1 | CDC37-RELATED |
LLU|FUN_029166-T1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
LLU|FUN_029167-T1 | E3 UFM1-PROTEIN LIGASE 1 |
LLU|FUN_029168-T1 | |
LLU|FUN_029169-T1 | |
LLU|FUN_029170-T1 | TESTIS EXPRESSED 11 |
LLU|FUN_029171-T1 | |
LLU|FUN_029172-T1 | TESTIS EXPRESSED 11 |
LLU|FUN_029173-T1 | FORKHEAD BOX PROTEIN O |
LLU|FUN_029174-T1 | FORKHEAD BOX PROTEIN O |
LLU|FUN_029175-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_029176-T1 | |
LLU|FUN_029177-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
LLU|FUN_029178-T1 | |
LLU|FUN_029179-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_029180-T1 | DUMPY: SHORTER THAN WILD-TYPE |
LLU|FUN_029181-T1 | |
LLU|FUN_029182-T1 | BESTROPHIN |
LLU|FUN_029183-T1 | CCR4 NOT-RELATED |
LLU|FUN_029184-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029185-T1 | - |
LLU|FUN_029186-T1 | - |
LLU|FUN_029187-T1 | - |
LLU|FUN_029188-T1 | - |