Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_029289-T1 | TRICHOHYALIN-RELATED |
LLU|FUN_029290-T1 | |
LLU|FUN_029291-T1 | |
LLU|FUN_029292-T1 | |
LLU|FUN_029293-T1 | |
LLU|FUN_029294-T1 | CADHERIN-87A |
LLU|FUN_029295-T1 | |
LLU|FUN_029296-T1 | CADHERIN-87A |
LLU|FUN_029297-T1 | |
LLU|FUN_029298-T1 | |
LLU|FUN_029299-T1 | CADHERIN-87A |
LLU|FUN_029300-T1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN |
LLU|FUN_029301-T1 | |
LLU|FUN_029302-T1 | DNA HELICASE RECQ FAMILY MEMBER |
LLU|FUN_029303-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029304-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_029305-T1 | |
LLU|FUN_029306-T1 | |
LLU|FUN_029307-T1 | |
LLU|FUN_029308-T1 | |
LLU|FUN_029309-T1 | |
LLU|FUN_029310-T1 | |
LLU|FUN_029311-T1 | |
LLU|FUN_029312-T1 | |
LLU|FUN_029313-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_029314-T1 | ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2 |
LLU|FUN_029315-T1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 |
LLU|FUN_029316-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_029317-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_029318-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_029319-T1 | |
LLU|FUN_029320-T1 | |
LLU|FUN_029321-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029322-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029323-T1 | |
LLU|FUN_029324-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029325-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029326-T1 | HEMOGEN |
LLU|FUN_029327-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029328-T1 | |
LLU|FUN_029329-T1 | |
LLU|FUN_029330-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029331-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029332-T1 | |
LLU|FUN_029333-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029334-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029335-T1 | |
LLU|FUN_029336-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029337-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_029338-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |